Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4210g00053 ATGGCGGGAGAATCTCCTTCTTCTTCAGTCGTGCTTACCATGGACGGTCTTGATGACGTCGACAACTACGTTTGGGCACATGAACAAGAAGGTTTGGCGTGGGACACATACCACCATATCTTTGAACTTGTGCATAATGGAAACATGTCATTTCGGGAGAATCGGTTGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAACCTGGAGATCCTGTTATCCTTGGCAACCGATGTGCAGCTTATCTTAGGATTAGCAAATTCTTAAAAGACAGATCTCCATCAGCTTCAGAATATAAACCATTGAGTGGGCTTGATCCCACAATACATGCTGAACTTGGTTTGAAGGATGCTGAGCAGCTTGTGGACCTTCTAAGTAATTCAGTAAGATCGTACCTCTTAAAGGCTAATGCGCTTTTTCTGTTAGAGAAATATGAAAAAGCCAGAGATGCTATCCTTTCAGGCCTTCAAGTTGATCCATTTAGCGACTCCTTGCGATCTTCACTTAAAAGTTTGGAAGTAGCATCTTCTAGTTTGATGGATATGAATAGACATGGACAGCCTGGGATGACTAGTCATGGACAACCAGAGCGCACTGATGACTTTGATTGCACTGTTTGCCTGAAGTTGTTATACGAACCTGTTACAACCCCTTGCGGACATTCTTTTTGCCACTCATGTCTATTTCAGTCAATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTTATCAGTCCTAGAAGGTGTTCTATCAGTGTGACATTGAAGAGCATCATACAAAAGAACTTTCCCGAAGAATATGCCAAAAGGAAGCAAGAGCATGACAGTTTGACCAACTTTGGTGTGGATTTGATTCCTCTATTTGTCATGGATGTTGTCATGCCGTGTCAAAAGTTCCCACTCAATATATTTGAACCTCGATATAGGCTTATGGTCAGAAGAGTAATGGAAGGGAATCATAGGATGGGGATGGCTGTAATTGATTCTACAACAGGTTCTTTAGCTGAGTATGCTTGTGAAGTGGAAATCACAGAGTGTGAACCACTTCCGGATGGACGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATAATCCGATCTCGGAATCAGGATGGGTATCGTGTAGCAGAGGTTGAATGGATACAGGATATCATGCCTCCAGAAGGCAGTAGAGAGAGACAGTATTTACAGGAATTGACGTATGATGCAGCTGAAACAGCTCGATCATGGATAAGAAGAGCCAAAGAAGCAGCAAGAGTAAAACAAGATCATAGAAGACTTGAGAGAATCCAGTCTGTTGAACTGATGATGCCCAGTCTAAGAGATCCAGAGCGCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGCTGAGGCCTTTAGAAAGATTGGATCTTATGGGCTCAAGAAATACTGGAGAGAGGATTAGACGTGGACTGAATTATCTGCGAGCAGAGGAACAACGCTGCAGAATTCAGTAA 1497 0.4275 MAGESPSSSVVLTMDGLDDVDNYVWAHEQEGLAWDTYHHIFELVHNGNMSFRENRLEEAINFYSRANSIKPGDPVILGNRCAAYLRISKFLKDRSPSASEYKPLSGLDPTIHAELGLKDAEQLVDLLSNSVRSYLLKANALFLLEKYEKARDAILSGLQVDPFSDSLRSSLKSLEVASSSLMDMNRHGQPGMTSHGQPERTDDFDCTVCLKLLYEPVTTPCGHSFCHSCLFQSMDHGNRCPLCRTVLFISPRRCSISVTLKSIIQKNFPEEYAKRKQEHDSLTNFGVDLIPLFVMDVVMPCQKFPLNIFEPRYRLMVRRVMEGNHRMGMAVIDSTTGSLAEYACEVEITECEPLPDGRFYIEIESRRRFRIIRSRNQDGYRVAEVEWIQDIMPPEGSRERQYLQELTYDAAETARSWIRRAKEAARVKQDHRRLERIQSVELMMPSLRDPERFSFWLASLSKLRPLERLDLMGSRNTGERIRRGLNYLRAEEQRCRIQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4210g00053 498 Pfam Zinc finger, C3HC4 type (RING finger) 206 243 - -
Pral4210g00053 498 ProSiteProfiles Lon N-terminal domain profile. 287 490 IPR003111 -
Pral4210g00053 498 SMART ring_2 206 243 IPR001841 -
Pral4210g00053 498 SMART tpr_5 131 164 IPR019734 GO:0005515
Pral4210g00053 498 SMART tpr_5 40 73 IPR019734 GO:0005515
Pral4210g00053 498 ProSiteProfiles Zinc finger RING-type profile. 206 244 IPR001841 -
Pral4210g00053 498 Gene3D - 288 390 IPR046336 -
Pral4210g00053 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 285 IPR013083 -
Pral4210g00053 498 SMART lon_5 289 490 IPR003111 -
Pral4210g00053 498 Pfam ATP-dependent protease La (LON) substrate-binding domain 290 488 IPR003111 -
Pral4210g00053 498 CDD RING-HC_LONFs_rpt2 203 247 - -
Pral4210g00053 498 SUPERFAMILY RING/U-box 200 268 - -
Pral4210g00053 498 PANTHER RING FINGER PROTEIN 127 32 490 - -
Pral4210g00053 498 SUPERFAMILY PUA domain-like 290 488 IPR015947 -
Pral4210g00053 498 SUPERFAMILY TPR-like 41 170 IPR011990 GO:0005515
Pral4210g00053 498 Gene3D Tetratricopeptide repeat domain 39 195 IPR011990 GO:0005515
Pral4210g00053 498 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Pral4210g00053 498 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4210g00053 Pral-Chr4210 282554 288584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4210g00053 197 247 C3H Transcription Factor Family AT1G74990 35.185 4.81e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4210g00053 - - pcin:129321082 921.768