Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4210g00034 ATGGGAAGAGTTAAACTAAAGATAAAGAAATTGGAGAGCCTTAGCAATCGACAAGTGACTTTCTCAAAACGAAAGAGTGGAATATTGAAGAAAGCCAAGGAATTATCAATATTGTGTGATATAGAGATTGCCCTTCTCATGTTTTCTCCGACAGGGAAGCCTATATTACTACAAGGAGAGCGCAGCAATCTCGAGCAGGTCATTCAAAAATTTGCTCAACAAAGCCCGCAAGAAAGGGCCAAAAGGAAATTGGAAAGCCTCGAAGCACTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAACAAGTCGAGGAATTGACCCATCACGTGAGAATACTACAAACTCAGCTTGCTGAAGCCCACCAGAGACTGAGCTATTGGAATAATGTAGAAAAGATCAATAATGTTGAACATCTTAGGCAAATGGAAGACTCACTAAAGGAGTCAATCAACCGAGTACGCCTACATAAGGAAAATTTGGGAAAACACCAACTAATGTCACTTGAATGCGCTAACCAGGAAGGGATAACTTTACCCGTGATAATGGCTGGCTTGCAAGAAGCTCAACCTCTGTCTTGGCTAATGAATAATGACATTAATCAATTGATTTTACCCAGCGAACCAAAATTTCTGCCATTTAGTGATAATCCCAATAGAGATGCTGAGTGCTCCATTAACGTTTCACTACCAGGCTATTCTGGTTATATAAGCACCGCCAAACTTGAGGTTGGCAACTCACCTCAGGTTGCTACTTTGGGTCAGGGTGGTGGTACCTTGAATGAGTTTAATGAAGGTTCCTGCTTAAGTGCACAACATTGCGAGCAGTTTTCATACCCTCCACCACCAGATACTGAGGAACAGAAGCATCATTCGGTTATGGACGGCAGACCAAGCCCTGTGGATTATCAAGTTAATGGCAGCTTTGATCTGCCTAGATCCATCTTTGAAAATGGTCATCAATTCTGGAATTCTACTTCTGCACCTTGTGGCATTGCCATGTACAATGAGAATGGCTACCATCAGTGA 1059 0.4174 MGRVKLKIKKLESLSNRQVTFSKRKSGILKKAKELSILCDIEIALLMFSPTGKPILLQGERSNLEQVIQKFAQQSPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQQVEELTHHVRILQTQLAEAHQRLSYWNNVEKINNVEHLRQMEDSLKESINRVRLHKENLGKHQLMSLECANQEGITLPVIMAGLQEAQPLSWLMNNDINQLILPSEPKFLPFSDNPNRDAECSINVSLPGYSGYISTAKLEVGNSPQVATLGQGGGTLNEFNEGSCLSAQHCEQFSYPPPPDTEEQKHHSVMDGRPSPVDYQVNGSFDLPRSIFENGHQFWNSTSAPCGIAMYNENGYHQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4210g00034 352 Coils Coil 77 97 - -
Pral4210g00034 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Pral4210g00034 352 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4210g00034 352 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4210g00034 352 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4210g00034 352 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 203 - -
Pral4210g00034 352 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Pral4210g00034 352 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4210g00034 352 Coils Coil 114 134 - -
Pral4210g00034 352 Coils Coil 150 170 - -
Pral4210g00034 352 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Pral4210g00034 352 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Pral4210g00034 352 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4210g00034 Pral-Chr4210 179282 183719 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4210g00034 1 276 Type I MADS-box Gene Family AT2G03060 49.129 1.81e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral4210g00034 SRF-TF 8.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4210g00034 - - lang:109362237 553.132