Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4210g00033 ATGGGAAGAGTTAAACTAAAGATAAAGAAATTGGAGAGCCTTAGCAATCGACAAGTGACTTTCTCAAAACGAAAGAGTGGAATATTGAAGAAAGCCAAGGAATTATCAATATTGTGTGATATAGAGATTGCCCTTCTCATGTTTTCTCCGACAGGGAAGCCTATATTACTACAAGGAGAGCGCAGCAATCTCGAGCAGGTCATTCAAAAATTTGCTCAACAAAGCCCGCAAGAAAGGGCCAAAAGGAAATTGGAAAGCCTCGAAGCACTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAACAAGTCGAGGAATTGACCCATCACGTGAGAATACTACAAACTCAGCTTGCTGAAGCCCACCAGAGACTGAGCTATTGGAATAATGTAGAAAAGATCAATAATGTTGAACATCTTAGGCAAATGGAAGACTCACTAAAGGAGTCAATCAACCGAGTACGCCTACATAAGGAAAATTTGGGAAAACACCAACTAATGTCACTTGAATGCGCTAACCAGTTGCAGGAAGGGATAACTTTACCCGTGATAATGGCTGGCTTGCAAGAAGCTCAACCTCTGTCTTGGCTAATGAATAATGACATTAATCAATTGATTTTACCCAGCGAACCAAAATTTCTGCCATTTAGTGATAATCCCAATAGAGATGCTGAGTGCTCCATTAACGTTTCACTACCAGGCTATTCTGGTTATATAAGCACCGCCAAACTTGAGGTTGGCAACTCACCTCAGGTTGCTACTTTGGGTCAGGGTGGTGGTACCTTGAATGAGTTTAATGAAGGTTCCTGCTTAAGTGCACAACATTGCGAGCAGTTTTCATACCCTCCACCACCAGATACTGAGGAACAGAAGCATCATTCGGTTATGGACGGCAGACCAAGCCCTGTGGATTATCAAGTTAATGGCAGCTTTGATCTGCCTAGATCCATCTTTGAAAATGGTCATCAATTCTGGAATTCTACTTCTGCACCTTGTGGCATTGCCATGTACAATGAGAATGGCTACCATCAGTGA 1065 0.4178 MGRVKLKIKKLESLSNRQVTFSKRKSGILKKAKELSILCDIEIALLMFSPTGKPILLQGERSNLEQVIQKFAQQSPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQQVEELTHHVRILQTQLAEAHQRLSYWNNVEKINNVEHLRQMEDSLKESINRVRLHKENLGKHQLMSLECANQLQEGITLPVIMAGLQEAQPLSWLMNNDINQLILPSEPKFLPFSDNPNRDAECSINVSLPGYSGYISTAKLEVGNSPQVATLGQGGGTLNEFNEGSCLSAQHCEQFSYPPPPDTEEQKHHSVMDGRPSPVDYQVNGSFDLPRSIFENGHQFWNSTSAPCGIAMYNENGYHQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4210g00033 354 Coils Coil 77 97 - -
Pral4210g00033 354 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Pral4210g00033 354 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Pral4210g00033 354 MobiDBLite consensus disorder prediction 290 310 - -
Pral4210g00033 354 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Pral4210g00033 354 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4210g00033 354 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 214 - -
Pral4210g00033 354 Coils Coil 114 134 - -
Pral4210g00033 354 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Pral4210g00033 354 Coils Coil 150 170 - -
Pral4210g00033 354 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4210g00033 354 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4210g00033 354 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4210g00033 354 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4210g00033 Pral-Chr4210 179282 183719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4210g00033 1 278 Type I MADS-box Gene Family AT2G03060 49.477 6.30e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral4210g00033 SRF-TF 8.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4210g00033 - - lang:109362237 561.607