Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4210g00031 ATGCAGGAATCTAGAGACCCTGCAATTAAACTCTTCGGCCAGAAGATTCCTGTGCCCGGTGAGGGCGAGCTTCCTGCTGTTACCGTCGAGGATGCCGAACAATCTGAATCGCCGAGGTCCATGGAGGTGGACACACAAGAAGGAGGAGACGGTGAGGATGGAGAACAGCAGAATTCTGAGGAGGAGAAGGACGAAGATGACGAGGATCATTCAGCTGGAAACACTACAGACAAAAAGAAAGAGGCTGATTATCCTCCAAACGTGGAAGAGACTGAGAATCCAGACTCATTGGCTGAGGCTAGTGTGAACCCGAAAACACCTTCCATAGATGAAGAGATTGCAAAATCAAAAAGTGACAGCTCAGAGAAGGAGAAAAGTGATGCAGCCAACCCTCAGGAGAAAACCCTGAAGAAGCCAGATAAAATACTTCCATGCCCTCGCTGCAACAGCATGGACACCAAATTCTGTTATTACAATAACTACAACATCAATCAGCCTCGTTATTTCTGCAAAGCCTGCCAAAGATACTGGACTGCAGGTGGTACCATGAGGAATGTACCGGTAGGGGCAGGTCGGCGAAAGAATAAGAACTCTTCTTCCCATTATCGCCACATCAGCATTTCAGAGGCTCTACAAGCAGCTAGAATTGATGCTCCAAACGGGACTCATCTTCCAGCGTTAAAGGGAAATGGCAGGGTCCTCAGTTTTGGATTAGATGCACCTATTTGTGATTCTATGGCATCTGTCCTGAATCTTGCAGAGAAAAAGGTCCTAAATGGTGTGCGAAACGGCTTTCATAGCAAAGGTGCTGAAACTGGTGGTGATGACTGCTCAAGTGCATCTTCCATTACAGTTTCAAATTCTATGGAAGAGAGTGGCAAAAGTGTTTCACAAGAATCATTGCTCAGAACTAATGGTTTTTCTCCTCCAATCCCATGTCTCCCTGGGGTTCCCTGGCCTTATCCTTGGAATACTCCAGTTCCTTCACCTCCTATATGCCCTCCAGGATTTCCCTTGTCATTCTATCCTGCAGCCTTTTGGAACTGTGGTGTGCCCGGAAATTGGAATGTACCCTGGTTTCCCCCACATCCCTCTGCGCAAAACCCAATATCTCCTTCCACTACCAGTAGTCCTAGTTCTCCAACACTAGGGAAGCATTCGAGGGACGGTGATGTGATCAGAGCAGACAACTCACCGAAAGAAGAACCATCAAAACCGAGAAATGGGTGTGTTTTGGTTCCTAAAACCTTGAGAATTGATGATCCAAGTGAAGCTGCAAAGAGTTCCATATGGGCAACTCTAGGAATCAAGAATGAATCAGCCAGTGGAGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGATAAGAAGGATCATGTCGTTGAAACTTCACCGGTGTTGCGGGCTAACCCTGCAGCCTTATCTAGATCCCTCAACTTTCATGAGAACTCCTGA 1455 0.468 MQESRDPAIKLFGQKIPVPGEGELPAVTVEDAEQSESPRSMEVDTQEGGDGEDGEQQNSEEEKDEDDEDHSAGNTTDKKKEADYPPNVEETENPDSLAEASVNPKTPSIDEEIAKSKSDSSEKEKSDAANPQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSSSHYRHISISEALQAARIDAPNGTHLPALKGNGRVLSFGLDAPICDSMASVLNLAEKKVLNGVRNGFHSKGAETGGDDCSSASSITVSNSMEESGKSVSQESLLRTNGFSPPIPCLPGVPWPYPWNTPVPSPPICPPGFPLSFYPAAFWNCGVPGNWNVPWFPPHPSAQNPISPSTTSSPSSPTLGKHSRDGDVIRADNSPKEEPSKPRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESASGGGMFKAFQSKKDKKDHVVETSPVLRANPAALSRSLNFHENS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4210g00031 484 MobiDBLite consensus disorder prediction 268 300 - -
Pral4210g00031 484 MobiDBLite consensus disorder prediction 274 300 - -
Pral4210g00031 484 MobiDBLite consensus disorder prediction 387 403 - -
Pral4210g00031 484 MobiDBLite consensus disorder prediction 369 384 - -
Pral4210g00031 484 Pfam Dof domain, zinc finger 140 197 IPR003851 GO:0003677|GO:0006355
Pral4210g00031 484 ProSitePatterns Zinc finger Dof-type signature. 145 181 IPR003851 GO:0003677|GO:0006355
Pral4210g00031 484 MobiDBLite consensus disorder prediction 110 141 - -
Pral4210g00031 484 MobiDBLite consensus disorder prediction 69 87 - -
Pral4210g00031 484 MobiDBLite consensus disorder prediction 1 142 - -
Pral4210g00031 484 MobiDBLite consensus disorder prediction 366 410 - -
Pral4210g00031 484 PANTHER CYCLIC DOF FACTOR 2 1 484 IPR045174 GO:0003700|GO:0006355
Pral4210g00031 484 MobiDBLite consensus disorder prediction 47 68 - -
Pral4210g00031 484 ProSiteProfiles Zinc finger Dof-type profile. 143 197 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4210g00031 Pral-Chr4210 165319 168548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4210g00031 1 482 C2C2-Dof Transcription Factor Family AT3G47500 49.602 8.40e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral4210g00031 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4210g00031 - - qsa:O6P43_022858 642.884