Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4210g00009 ATGTCTGGCCAGAAAAGTCGTAGAGCTTCAAACTTCAACGAGAATGAGATTAATGATCTTGTGTCCAAGTTACAAGCACTTCTGCCACGCCTGAACCGAAGGGCTGACTCAAGGGTATCAGTATCGAAGGTGTTGAAAGAAACTTGCAGTCACATCAAGAAGCTACAGAAAGAGGTGGAAGAGCTCAGTGAAAAGCTAATAGAGCTGATGGATTCTGCTGACATTAGGGATATAGACGAAGAGAGTCTTCGAAGATTATTGCTACATTGA 270 0.4296 MSGQKSRRASNFNENEINDLVSKLQALLPRLNRRADSRVSVSKVLKETCSHIKKLQKEVEELSEKLIELMDSADIRDIDEESLRRLLLH 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4210g00009 89 PANTHER DNA BINDING PROTEIN 1 87 IPR044172 -
Pral4210g00009 89 Coils Coil 45 72 - -
Pral4210g00009 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 70 IPR036638 GO:0046983
Pral4210g00009 89 Gene3D - 6 85 IPR036638 GO:0046983
Pral4210g00009 89 Pfam Helix-loop-helix DNA-binding domain 15 56 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4210g00009 Pral-Chr4210 48030 48966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4210g00009 1 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 50.633 2.08e-17 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4210g00009 HLH 2.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4210g00009 - - gmx:100790746 108.997