Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4209g00045 ATGAAGCCATTTCTGTCATTGAATCATACTGATACTGACGTCAATTGTTCACACCTTGATTCTAGTCACTCAATGGCTCGTGTTCCTTATCCGTATGGTGATCCTTTTTATGGTGGCTCTTTAGTATCGTATGGATCACAGGCTATTAATCAACCCCAAATTGTTCCCCAACTGCTGGGGCTCACATCTACTAGAGTTGCATTGCCACTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGAATACTGAGAAGGCGACAGTCACGTGCAAAGCTGGAGGCTCAAAACAAACTTGTCAAAAGCCGTAAGCCATATCTTCACGAGTCTCGGCATCGCCATGCTCTGAACAGGGTTAGGGGATCTGGAGGACGCTTCCTCAGCACCAGACAGCTTCAACAGTCCAATGTACAAGTTGTGACTAGTGCCAATTCTGGTTCAGACTCTGTCAACTTGTATCAAAAGAAAGACATATCAGAGGTGGAGATTCGTCCCTTAAGAACCGGCACTGGTGAAAATGCATCTTCTATCTCGACCTGCTCTGACATGACAAGTGGGTCCAGTAACAATGTGAATTTTAGGCAACCAGAGTGCAAATTCTTGGGGAACTCTACAAACATGGGCAGTGCATCACAGTTTAGCGGTGGACTCACCTTTGGTGGGACCCAGCAACGTGCACCAATCGTCCGGTGA 708 0.4619 MKPFLSLNHTDTDVNCSHLDSSHSMARVPYPYGDPFYGGSLVSYGSQAINQPQIVPQLLGLTSTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLVKSRKPYLHESRHRHALNRVRGSGGRFLSTRQLQQSNVQVVTSANSGSDSVNLYQKKDISEVEIRPLRTGTGENASSISTCSDMTSGSSNNVNFRQPECKFLGNSTNMGSASQFSGGLTFGGTQQRAPIVR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4209g00045 235 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 197 IPR001289 GO:0003700|GO:0006355
Pral4209g00045 235 MobiDBLite consensus disorder prediction 174 193 - -
Pral4209g00045 235 Gene3D - 74 136 - -
Pral4209g00045 235 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Pral4209g00045 235 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Pral4209g00045 235 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Pral4209g00045 235 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Pral4209g00045 235 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Pral4209g00045 235 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4209g00045 Pral-Chr4209 280818 284408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4209g00045 19 140 CCAAT-HAP2 Transcription Factor Family AT1G17590 58.065 4.85e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pral4209g00045 CBFB_NFYA 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4209g00045 K08064 - gmx:100793856 321.627