Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4209g00043 ATGGCTCGTGTTCCTTATCCGTATGGTGATCCTTTTTATGGTGGCTCTTTAGTATCGTATGGATCACAGGCTATTAATCAACCCCAAATTGTTCCCCAACTGCTGGGGCTCACATCTACTAGAGTTGCATTGCCACTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGAATACTGAGAAGGCGACAGTCACGTGCAAAGCTGGAGGCTCAAAACAAACTTGTCAAAAGCCGTAAGCCATATCTTCACGAGTCTCGGCATCGCCATGCTCTGAACAGGGTTAGGGGATCTGGAGGACGCTTCCTCAGCACCAGACAGCTTCAACAGTCCAATGTACAAGTTGTGACTAGTGCCAATTCTGGTTCAGACTCTGTCAACTTGTATCAAAAGAAAGACATATCAGAGGTGGAGATTCGTCCCTTAAGAACCGGCACTGGTGAAAATGCATCTTCTATCTCGACCTGCTCTGACATGACAAGTGGGTCCAGTAACAATGTGAATTTTAGGCAACCAGAGTGCAAATTCTTGGGGAACTCTACAAACATGGGCAGTGCATCACAGTTTAGCGGTGGACTCACCTTTGGTGGGACCCAGCAACGTGCACCAATCGTCCGGTGA 636 0.4717 MARVPYPYGDPFYGGSLVSYGSQAINQPQIVPQLLGLTSTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLVKSRKPYLHESRHRHALNRVRGSGGRFLSTRQLQQSNVQVVTSANSGSDSVNLYQKKDISEVEIRPLRTGTGENASSISTCSDMTSGSSNNVNFRQPECKFLGNSTNMGSASQFSGGLTFGGTQQRAPIVR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4209g00043 211 ProSitePatterns NF-YA/HAP2 subunit signature. 55 75 IPR018362 GO:0003677|GO:0016602
Pral4209g00043 211 MobiDBLite consensus disorder prediction 150 169 - -
Pral4209g00043 211 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 53 107 IPR001289 GO:0003700|GO:0006355
Pral4209g00043 211 PRINTS CCAAT-binding transcription factor subunit B signature 53 75 IPR001289 GO:0003700|GO:0006355
Pral4209g00043 211 PRINTS CCAAT-binding transcription factor subunit B signature 84 107 IPR001289 GO:0003700|GO:0006355
Pral4209g00043 211 ProSiteProfiles NF-YA/HAP2 family profile. 50 110 IPR001289 GO:0003700|GO:0006355
Pral4209g00043 211 Gene3D - 50 112 - -
Pral4209g00043 211 SMART cbf3 49 110 IPR001289 GO:0003700|GO:0006355
Pral4209g00043 211 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 6 173 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4209g00043 Pral-Chr4209 280045 284408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4209g00043 2 116 CCAAT-HAP2 Transcription Factor Family AT1G17590 58.974 1.91e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pral4209g00043 CBFB_NFYA 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4209g00043 K08064 - qsa:O6P43_002694 302.753