Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4209g00016 ATGACGTCGTTTTATTTGCCATGGCATAAAGGCGCGGTTAATGAAAGACTTGGAAAGAACCCGAGTCTTCCCCGAATGCATAATTCATCGCCGGAGCCCATTGAACGACAGCAAAGAAGCGTTAAACGACATCAAACTCGAGGATTCACTCTGTACGCCAAGCTGGATAGGCACAGAGGAGACCGCTATGGCAACACCAACCACGATTCTCACCCGTATCGTCACTCCAGAGCTCCGTCCCGCTTCTCGGACGCTCCCTTCAACAACCGCGGCGGTGGAGCCTCTCACCACCGGCAGTTTGACAGCCCACCCCGTCGCTCTCCTGGAAGAGGTGCAGGGTTCCGATCACCGGGTTTTGGCGGCAGCGATGGGTTTAGGCCAGTGAGTGGTGAGGGTCCTGGAGGGTTTGGGTTTAACGGTCGTCAGGGGCAGCCTCTGTCGGGTCAGAAACGAGGGTTTCCCTTCTCTGGACGTGGAGGGTCGCCAGACCGTTTTGGGGGGGAAAGTTTTGCCAAACTTTTTGTTGGATCTGTTCCACGGACAGCAACTGAAGAAGATATTCGGCCTTTGTTCGAGCAACATGGGAATGTGGTTGAGGTTGCTCTGATCAAGGATAGAAAGACAGGACAGCAGCAAGGTTGCTGTTTCATAAAGTATGCTTCACCTGATGAAGCTGATCAGGCAATTAAAGCATTGCACAATCAACATATTCTTCCCGGAGGAGTTGGTCCAATCCAAGTGAGATATGCTGATGGTGAACGAGAACGCCTTGGTGCAGTTGAATACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACTGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGACGGGTAGAAGATGTTTATCTGATGCGTGATGAGAAGAAGCAAAGCCGTGGATGTGGTTTTGTTAAATACTCTCACAGAGATATGGCCCTGGCAGCTATAAATGCACTTAATGGAATTTATACAATGAGAGGTTGTGATCAACCTTTAACTGTACGGTTTGCTGATCCTAAGAGACCTCGACAAGGGGATTCAAGGAGTCCTGCATTTGGTTCAAGATTTGAAGTACCAGGTCCCAGACATCCAGCATTTGGTCCAAGATTTGAAGCACCGAGTTCTATACCTCCATTCATTATTAATGATCCCTTGGGTGATCAAGCCTCTGCTCCCACTGCTTGGCGTCCAATGCATCCTTCAAATATGGGGCCATCATCTAACGCTGGTATGCATAACCTGAGGCCTCCATTGCTTCCAAGATCTGGTGACATGGACATGACATTGGCTATGAATGCAGGTGGCCCTGGGAATGGCTTTGGAGGCCCTTCAAATGGTCCTTTTCAAAGACAGGCTCTGTCATCAATGTCACAACAGAATTTCAATCAAAACATTCCGCATATTCCACCAGCCAGCCAACAGATGTCGCCACTGCAGAAGCCTATTCAATCACCTCAGGACAAGCCTTCCTCCCTCCAGATGTACCCTCCAGCCCCGATCCCTTACTCACAAACACCACCTTCTCTTGCATCATTTAGGCAGGTTGGCCAACCACAACTTCCTTTTTCTGCTGGTCCTCTTCCTTCACAACAGGTGCATGGTCTAAATGGACACTTTCCAGTTTCTCAGCCTCAAGCTCAGCAGGTTGCTTCACCTGCTGCAGCTGCCCAGGGCCATGCTCCTCTAGATGCCAGCTTGCAAACAAATACAACGTTGACCACTACAAATCAACAGCAACTATCTACCTCTATGCAGCAGCAGCCACTTCAGCCTCAGCAGTCTCCATCCCAGTTGGCGCAAATGTTGTCACAACAAACTCAGACTTTGCAAGCAAGCTTTCATTCATCTCAGAAGGCCTTCTCTCAGCTTCAACAACAACTACAGATGATGCAACCATCTAGTCAAGGTTTAACACTGCAGCAAAATGCAGAATCTATGAAAAAGCAGTCTCGGTGGACGGGGGCTGCACCAACTGCAGATGTGCCTTCATCCTTATCTGCTTCTGCTGCCCCTCCAATAAGCCAGAACATAACTCCTGCAAAATGTGATTGGACAGAGCATATATCTCCTGAGGGCTTCAAGTACTATCACAATAGTGTTACTGGCGAAAGTCGGTGGGAGAAACCCGAAGAGTTGATATTATCTGAACAGCAAAGGCCATCTGTTCAGCAATCTCAAAATCAGTCACAGCCTCCAATATCACCTCAGCAAGTTCCTCAAATCCAGCAATTACAGTCTCAAGGCCAACTCCAAGGACAGGTTCTCCAGCAACAGTACCAGGCATATGCAGTTGCAGGTCATCAAAATGTTCAGGGAATGTATTCTATGCAAGAATGGATGTGGAAAGATAAGCCAGCAGGGATTTGA 2376 0.4827 MTSFYLPWHKGAVNERLGKNPSLPRMHNSSPEPIERQQRSVKRHQTRGFTLYAKLDRHRGDRYGNTNHDSHPYRHSRAPSRFSDAPFNNRGGGASHHRQFDSPPRRSPGRGAGFRSPGFGGSDGFRPVSGEGPGGFGFNGRQGQPLSGQKRGFPFSGRGGSPDRFGGESFAKLFVGSVPRTATEEDIRPLFEQHGNVVEVALIKDRKTGQQQGCCFIKYASPDEADQAIKALHNQHILPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRQGDSRSPAFGSRFEVPGPRHPAFGPRFEAPSSIPPFIINDPLGDQASAPTAWRPMHPSNMGPSSNAGMHNLRPPLLPRSGDMDMTLAMNAGGPGNGFGGPSNGPFQRQALSSMSQQNFNQNIPHIPPASQQMSPLQKPIQSPQDKPSSLQMYPPAPIPYSQTPPSLASFRQVGQPQLPFSAGPLPSQQVHGLNGHFPVSQPQAQQVASPAAAAQGHAPLDASLQTNTTLTTTNQQQLSTSMQQQPLQPQQSPSQLAQMLSQQTQTLQASFHSSQKAFSQLQQQLQMMQPSSQGLTLQQNAESMKKQSRWTGAAPTADVPSSLSASAAPPISQNITPAKCDWTEHISPEGFKYYHNSVTGESRWEKPEELILSEQQRPSVQQSQNQSQPPISPQQVPQIQQLQSQGQLQGQVLQQQYQAYAVAGHQNVQGMYSMQEWMWKDKPAGI 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4209g00016 791 MobiDBLite consensus disorder prediction 464 562 - -
Pral4209g00016 791 SUPERFAMILY RNA-binding domain, RBD 120 250 IPR035979 GO:0003676
Pral4209g00016 791 Gene3D - 681 732 - -
Pral4209g00016 791 PANTHER RNA BINDING PROTEIN 47 634 - -
Pral4209g00016 791 Gene3D - 258 351 IPR012677 -
Pral4209g00016 791 Gene3D - 167 257 IPR012677 -
Pral4209g00016 791 MobiDBLite consensus disorder prediction 508 555 - -
Pral4209g00016 791 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 252 IPR000504 GO:0003723
Pral4209g00016 791 FunFam Flowering time control protein FCA 258 348 - -
Pral4209g00016 791 ProSiteProfiles WW/rsp5/WWP domain profile. 681 714 IPR001202 GO:0005515
Pral4209g00016 791 ProSitePatterns WW/rsp5/WWP domain signature. 687 712 IPR001202 GO:0005515
Pral4209g00016 791 MobiDBLite consensus disorder prediction 464 494 - -
Pral4209g00016 791 Pfam WW domain 686 712 IPR001202 GO:0005515
Pral4209g00016 791 MobiDBLite consensus disorder prediction 14 159 - -
Pral4209g00016 791 SMART rrm1_1 172 248 IPR000504 GO:0003723
Pral4209g00016 791 SMART rrm1_1 263 338 IPR000504 GO:0003723
Pral4209g00016 791 CDD WW 684 714 IPR001202 GO:0005515
Pral4209g00016 791 MobiDBLite consensus disorder prediction 338 361 - -
Pral4209g00016 791 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 342 IPR000504 GO:0003723
Pral4209g00016 791 SUPERFAMILY WW domain 686 717 IPR036020 GO:0005515
Pral4209g00016 791 MobiDBLite consensus disorder prediction 719 741 - -
Pral4209g00016 791 SUPERFAMILY RNA-binding domain, RBD 262 365 IPR035979 GO:0003676
Pral4209g00016 791 FunFam flowering time control protein FCA isoform X2 166 257 - -
Pral4209g00016 791 SMART ww_5 682 714 IPR001202 GO:0005515
Pral4209g00016 791 MobiDBLite consensus disorder prediction 576 608 - -
Pral4209g00016 791 PRINTS Paraneoplastic encephalomyelitis antigen family signature 267 282 IPR002343 GO:0003723|GO:1990904
Pral4209g00016 791 PRINTS Paraneoplastic encephalomyelitis antigen family signature 282 294 IPR002343 GO:0003723|GO:1990904
Pral4209g00016 791 PRINTS Paraneoplastic encephalomyelitis antigen family signature 171 186 IPR002343 GO:0003723|GO:1990904
Pral4209g00016 791 PRINTS Paraneoplastic encephalomyelitis antigen family signature 323 340 IPR002343 GO:0003723|GO:1990904
Pral4209g00016 791 MobiDBLite consensus disorder prediction 49 78 - -
Pral4209g00016 791 MobiDBLite consensus disorder prediction 634 678 - -
Pral4209g00016 791 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 236 IPR000504 GO:0003723
Pral4209g00016 791 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 330 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4209g00016 Pral-Chr4209 132354 142624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4209g00016 169 371 Eukaryotic Initiation Factors Gene Family AT1G71770 27.273 1.04e-15 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4209g00016 - - pcin:129319669 1154.81