Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4208g00001 ATGGCTTCAGAGAGCAGAGCATCAAAACCATTCCCCGAACTTCATACTTCAGGCGCAAGCAATCGCAGAACCCATCATGGTACACCCTCAATCAGTAAACCTTTTGTTTGTTACTCGCATTCCACAAAAGCCTCCGCCAATTCTCTTCTCGACCAAGAGATTACAATCTATCCATCAAAAATCCAAAGGAATGGCTATATTCAACCCTTTGGTTTCGTGATTATTGTCGACGAGCCATCTTTTCGGGTTATAGGGTACAGTGAAAACGCGCGGGATTTTCTGAGCCTTGACACCCCACAATCAGTTCCGAGTCTGGAAGAGTGTGAAGCCCTCGAGATTGGGTCCGACCTTCGGAATTTCTTCACCCCATTTAGCGTGCTTCAGCTTGGAAAGGCATTTGAGGCTGTAGAACTGTCACAGTTGAACCCCATTTGGGTTCGTTCTGGGAATTCGGAGAAGCCTTTCTATGCGATTCTGCATAGGATTGATGTCGGGGTTGTGATTGATTTCGAGCCTGCCAGAACAGAGGATCCTGAGCTGTCCATTTCGAGGTGGATGCAATCTCAGAAGCTAGCGGGGCGTGCAATTTCGCGGTTCAAATCATTTCCTGGTGGCGGTATTAAGCATTGTTGTGATATTCTAGCTGAAAGTGTCAGAGAACTTACCGGTTATGATAGCGTAATGGTTTATAAATTTCATGAGGAGGAGCATAGTGAGGTTGTTGCTGAGAGTAAGAGGCCAGACTTGGAGCCTTGTATTGGTTTGCATCATCTTGCTTTTGATATTCCTCAGGATTTAAAGTTGATGTTCAAGCAGAATCGAATTAGCATGATTGTGGATCGCCATGAAACTCCTGTTCATGTGATTCAGGATGAGGGTCTTATGCAGCCTTTGTGCTTGATTGGATCAACCCTTCTTGCCCCACATAACTGTCATGCCAAGTACATGGCCAATATGAGATCAACCGCTTCATTGGCTATTGCAATTGTAATAAATGGGCATGATGAAGAAATTGTTACTAATTTTACCTCAATAATGAGGCCATGGGGCCTAGTTGTTTACCATCATACTTCTGCTCTATTCATTCCTTTCCCTTTGCGCTGCACATGTGAATTCCTAATACAGGCCTTTGAGCACCAACTGAATGTAGAGCTTCAATTGGAATCAGTATTACTGGAGAAACAAGTTCTAAGGACCCAGGCTGTGTTGTATGGCATGCTGCTTAGGGACTCTGCCGCTGGTATTGTTACTCAATCCCCAAGTATTATGGACCTTATGAAGTGTGATGGAGCAGCTCTGTACTACCATGGAAACTACTACCCCTTAGGTGTCACCCCAAATGAGTCTCAGGTAAAGGACATTATAGGGTGGTTGCTGACCTTCCATGGAGATTCAACAAGTGCTGATAGTCTGGCTGATGCAGGCTATCCTGGAGCTGCCTCTCTTGGTGATTCAGTTTGTGGAATGACTGTTGCTTATATCACAGCAGAAGATTTTCTATTCTGGTTCAGATCCCGTGTGGCAAGAGAGATCAAACCGGATGGTTCAAAGGATTTGGAATTGAATGAAATTCGCTCTGTGCAGCTTATCCTACAAGAATCAATGAATGTTGTTGAGCATAGCAACTCTAAGTCTGTTGTAGATTCCCAGCCTCGGCATCATGAGTTGACAGGTGTGGATGTTCTAATTTGGACAGCAAAGGAAATCGATAGATTGATAGAAACTGCTATTGCTCCCATATTTTCCGTAGATGTTGATGGACGAATAAGAGGGTGGAATGCTAAGGTTGCGGAATTGACTAGACTCTTAGTTGAGGAAGCTGTGGGAAAGTCATTGGCTCATGATCTTGTGCATAAAGAGTCCAAAGAAAGTGTAGATAGGCTTATTTCTCGTGCTTTAAGAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAGGACCTTTGGCCCACAAAAGTATAAGATGGCAGTTTTTGTTGCGGTGAATGCTTGCTCCACCAAGGATCCCATAAATGAAATCACTGGGGTATGCTTTATTGGTCAGGATGTCGCTGATCAAAAAGTACTAATGGACAAATTTATTCACTTACAGGGTGACTACAAGGCCATAGTACATAACCCGAGTCCATTAGTCCCTCCCATTTTTGCGTCGGATGCTAACACATGCTGTTCAGAGTGGAACATTGCCATGGAAAAGCTTACTGGTTGGGTTCGTGGGGATGTCATTGGGAAATTGTTGGTGGGAGAGGTTTTTGGTAATTTCTGTCAACTGAAAGGTTTGAATGCCGTAGCGAACTTCTCGATTCTATTGCACAATGCACATGGTGGACAGGATACAGAAAAATTCCCACTTTCATTCCTTGATCGGCATGGAAACTTTGTGCAAGCTCTTTTGACTGCACATAAGAGGGTTAACCCCAATGGTCAGATTATTGGGGTTCTCTGCTTCTTGCAAACTGCAAGTCCTGAACTTCAACAGTCTCTTGACGTCCAGAGGCAAATGGAGAAAAATTGCCTTGCTGTGATGAAAGAATTAGCTTTCATTCGTCAAGAAATAAAAAATCCTTTGAGTGGAATACGCTTTTCTAACTCTCTTTTGAAGGACACAGAATTGACTGATGATCAAAATCAGTTTCTTGTGGCCATTGATGCTTGTGAGAAGCAGATGTTCAAGATAATACACGATGCGGGCCTGGAAAGCATTGAGGACAGCTGGAGCATTTTAGTGGGTGCTTTTCTTTCATCTGACAACATTCAACATCTTCGATTCTTCAAGTGGTCAATCTTAAATGTACCAACTCAGACAAAGCACATGTCCTTGGAGCTTGAGAAGGAGGAATTCCTTCTTGGGAATGCCATAGATGCAGTGATTAGCCAAGTGACTTTATCGCTGAGAGAGAGATATTTACAATTGATTTGTAATATTTCTAAAAAAGTCAAGAGACTAGCCGTTTATGGTGATCAATCGAGAATGCAACAGGTTTTGGCTGATTTCTTGTTAAACATGGTGCATTATGCTCCATCTCCAGATGGTTGGGTAGAAATTGATGTTGATGCTAGATTCAAGAAAATTTCTGATGGACTCACACTTCTGCATGCTACATTCAGGATGGTATGTCCTGGTGAAGGTCTCCCCCCTGAACTGATTCAAGACATGTTCCATAGCAGTGAGTGGAGGAGTCAAGAAGGGTTAGGGCTAGGAATGAGCAGGAAGATCCTGGGGCTAATGGATGGTGAGGAATCAGAATGCCACGTATTGGAGGAGGCATTGGATCTGCTGCAGGAGGTATTGGGTGCTGGAAGAGGGTTTGGAGGTGCTGCCGGAGGTGCTGCCGGAGGTGTTGAGGAGGTATTGGCAGAGCAGCTGGTGGTGTTGGATCAGAATTCGTACAACATTGTCAGGTTATGGTGTGAAGGATATGGTCTGTTCCATGGTAGTGAGTGGAGGAGTCGCGAAGGATTAGGGCTTAGCATAGGCAGGAAGATCCGGAAGCCAATGGATGGTGAGGTCCAGATATATGAGGGAGGCCGAAAGGTGCTTCTTCTTGATTGGGCTTGA 3558 0.4413 MASESRASKPFPELHTSGASNRRTHHGTPSISKPFVCYSHSTKASANSLLDQEITIYPSKIQRNGYIQPFGFVIIVDEPSFRVIGYSENARDFLSLDTPQSVPSLEECEALEIGSDLRNFFTPFSVLQLGKAFEAVELSQLNPIWVRSGNSEKPFYAILHRIDVGVVIDFEPARTEDPELSISRWMQSQKLAGRAISRFKSFPGGGIKHCCDILAESVRELTGYDSVMVYKFHEEEHSEVVAESKRPDLEPCIGLHHLAFDIPQDLKLMFKQNRISMIVDRHETPVHVIQDEGLMQPLCLIGSTLLAPHNCHAKYMANMRSTASLAIAIVINGHDEEIVTNFTSIMRPWGLVVYHHTSALFIPFPLRCTCEFLIQAFEHQLNVELQLESVLLEKQVLRTQAVLYGMLLRDSAAGIVTQSPSIMDLMKCDGAALYYHGNYYPLGVTPNESQVKDIIGWLLTFHGDSTSADSLADAGYPGAASLGDSVCGMTVAYITAEDFLFWFRSRVAREIKPDGSKDLELNEIRSVQLILQESMNVVEHSNSKSVVDSQPRHHELTGVDVLIWTAKEIDRLIETAIAPIFSVDVDGRIRGWNAKVAELTRLLVEEAVGKSLAHDLVHKESKESVDRLISRALRGEEDKNVEIKMRTFGPQKYKMAVFVAVNACSTKDPINEITGVCFIGQDVADQKVLMDKFIHLQGDYKAIVHNPSPLVPPIFASDANTCCSEWNIAMEKLTGWVRGDVIGKLLVGEVFGNFCQLKGLNAVANFSILLHNAHGGQDTEKFPLSFLDRHGNFVQALLTAHKRVNPNGQIIGVLCFLQTASPELQQSLDVQRQMEKNCLAVMKELAFIRQEIKNPLSGIRFSNSLLKDTELTDDQNQFLVAIDACEKQMFKIIHDAGLESIEDSWSILVGAFLSSDNIQHLRFFKWSILNVPTQTKHMSLELEKEEFLLGNAIDAVISQVTLSLRERYLQLICNISKKVKRLAVYGDQSRMQQVLADFLLNMVHYAPSPDGWVEIDVDARFKKISDGLTLLHATFRMVCPGEGLPPELIQDMFHSSEWRSQEGLGLGMSRKILGLMDGEESECHVLEEALDLLQEVLGAGRGFGGAAGGAAGGVEEVLAEQLVVLDQNSYNIVRLWCEGYGLFHGSEWRSREGLGLSIGRKIRKPMDGEVQIYEGGRKVLLLDWA 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4208g00001 1185 Gene3D PAS domain 60 309 - -
Pral4208g00001 1185 SMART pas_2 698 768 IPR000014 -
Pral4208g00001 1185 SMART pas_2 567 634 IPR000014 -
Pral4208g00001 1185 FunFam Phytochrome 390 528 - -
Pral4208g00001 1185 Pfam GAF domain 210 385 IPR003018 GO:0005515
Pral4208g00001 1185 Gene3D PAS domain 712 820 - -
Pral4208g00001 1185 ProSiteProfiles PAS repeat profile. 565 636 IPR000014 -
Pral4208g00001 1185 SMART HKATPase_4 986 1096 IPR003594 -
Pral4208g00001 1185 MobiDBLite consensus disorder prediction 14 28 - -
Pral4208g00001 1185 SMART HisKA_10 840 905 IPR003661 GO:0000155|GO:0007165
Pral4208g00001 1185 Gene3D PAS domain 558 697 - -
Pral4208g00001 1185 Pfam His Kinase A (phospho-acceptor) domain 845 896 IPR003661 GO:0000155|GO:0007165
Pral4208g00001 1185 Pfam PAS fold 57 173 IPR013654 GO:0006355
Pral4208g00001 1185 SUPERFAMILY PYP-like sensor domain (PAS domain) 61 176 IPR035965 -
Pral4208g00001 1185 PRINTS Phytochrome signature 306 327 IPR001294 GO:0006355|GO:0009584
Pral4208g00001 1185 PRINTS Phytochrome signature 681 701 IPR001294 GO:0006355|GO:0009584
Pral4208g00001 1185 PRINTS Phytochrome signature 221 240 IPR001294 GO:0006355|GO:0009584
Pral4208g00001 1185 PRINTS Phytochrome signature 121 143 IPR001294 GO:0006355|GO:0009584
Pral4208g00001 1185 PRINTS Phytochrome signature 568 584 IPR001294 GO:0006355|GO:0009584
Pral4208g00001 1185 PRINTS Phytochrome signature 661 678 IPR001294 GO:0006355|GO:0009584
Pral4208g00001 1185 PRINTS Phytochrome signature 587 602 IPR001294 GO:0006355|GO:0009584
Pral4208g00001 1185 ProSiteProfiles Histidine kinase domain profile. 847 1079 IPR005467 -
Pral4208g00001 1185 MobiDBLite consensus disorder prediction 1 28 - -
Pral4208g00001 1185 Coils Coil 1076 1096 - -
Pral4208g00001 1185 NCBIfam PAS domain S-box protein 572 687 IPR000014 -
Pral4208g00001 1185 CDD HisKA 845 895 IPR003661 GO:0000155|GO:0007165
Pral4208g00001 1185 CDD PAS 576 647 IPR000014 -
Pral4208g00001 1185 Pfam Phytochrome region 400 519 IPR013515 GO:0006355|GO:0009584
Pral4208g00001 1185 SUPERFAMILY GAF domain-like 187 381 - -
Pral4208g00001 1185 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 986 1079 IPR003594 -
Pral4208g00001 1185 PANTHER OS08G0260000 PROTEIN 52 902 - -
Pral4208g00001 1185 SUPERFAMILY PYP-like sensor domain (PAS domain) 713 815 IPR035965 -
Pral4208g00001 1185 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 206 375 IPR016132 -
Pral4208g00001 1185 Gene3D - 922 1082 IPR036890 -
Pral4208g00001 1185 Pfam PAS fold 699 818 IPR013767 GO:0006355
Pral4208g00001 1185 Pfam PAS fold 568 683 IPR013767 GO:0006355
Pral4208g00001 1185 Gene3D - 187 518 IPR029016 -
Pral4208g00001 1185 Gene3D - 390 507 IPR043150 -
Pral4208g00001 1185 SUPERFAMILY GAF domain-like 393 512 - -
Pral4208g00001 1185 ProSiteProfiles PAS repeat profile. 699 751 IPR000014 -
Pral4208g00001 1185 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 946 1079 IPR036890 -
Pral4208g00001 1185 CDD PAS 710 818 IPR000014 -
Pral4208g00001 1185 Gene3D - 821 900 - -
Pral4208g00001 1185 SUPERFAMILY PYP-like sensor domain (PAS domain) 568 658 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4208g00001 Pral-Chr4208 11707 23638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4208g00001 38 1078 Histidine Kinase Gene Family AT4G16250 56.077 0.0 1186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4208g00001 K12121 - zju:107418995 1340.87