Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4201g00003 ATGGACTTTGAAGGGAACAGCATGTTCTGTTTGAACAACGCCAACAGAGAGCAAAACGGTGGTGGAAATAGTAATAACAGTACCAACTTTTCTTGGGAGTTATGGGAACCACCTTCTTCTAACAATTCTACCCTCATAAACACTTTCTACGCCGTCCATACGGCGGACACCTCGGCCGCTGTCGCCACCACTGCTAGCCACGAGGCTGGCCTCGCAAACGCGCTCATGTTTCTTCCTCAGGCTAGTACTACTACTGCTGCTGTTGATCGTGACCACGACCGCGGCGTTGAGCACGATGGTCATCGTCACCATCATCATCATCAGCGGCGGCGGCAACAACAGCCGGAGGCTTTGTACTCCGGCGATGGGGGCCACGTGCATCTGGACCCACATCTCATGTGCTTGAAGCTGGGGAAGAGGCATTATTTTGAAGACGCTAATGCTCCTCTTGGGGGCGGCGGAGGCGACGGCGGGTTTGCTCTGGCGGGGAAGAGAGGGAGAGGATTCTATGGCGGCAGCGTGAAGACGGCGACGGCAACGACGGTGCCGAGGTGCCAGGTGGAGGGTTGCCACGTGGCGCTGTTGAACGCGAAGGAGTACCACCGGAGACACAAAGTTTGTGAGATGCACTCCAAGGCACCGAAGGTTGTCGTGTTAGGGTTGGAGCAGAGATTTTGTCAACAGTGTAGCAGGTTTCATGTGGTATCGGAGTTCGATGATTCCAAGAGAAGTTGCCGTAGGAGACTGGCTGGCCACAATGAACGAAGAAGAAAGAGCTTTCACGATTCTGTCACTAGGAATTCCTCCTCTCAAGAAAATAAGTTACTGGTTGGAGGGTTCCCTTACTTATCATCATCACCTCCACCATCATCTGGCTGTGCTCTCTCTCTTCTGTCATCGTCTAAGAGTGACCATTCATGGCTTTCTCCGGCTGATCTCTCGGCGAGATGCAGCGCCGCCCTACGAGAACTCATAGACGAGAACCGGGCAGCCTCCATGGCTAAACAAATCATTTTGGAAAGAGACTGGCACCCACACCACAACTACCATCACCAGGAAGAAGAAGATGATGACGACCATAATAATAAGGAGATTCAACTTCAATCCAATTACAATTTCTCTCAACACCACCAGATGTTTCCCTAG 1146 0.5209 MDFEGNSMFCLNNANREQNGGGNSNNSTNFSWELWEPPSSNNSTLINTFYAVHTADTSAAVATTASHEAGLANALMFLPQASTTTAAVDRDHDRGVEHDGHRHHHHHQRRRQQQPEALYSGDGGHVHLDPHLMCLKLGKRHYFEDANAPLGGGGGDGGFALAGKRGRGFYGGSVKTATATTVPRCQVEGCHVALLNAKEYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSFHDSVTRNSSSQENKLLVGGFPYLSSSPPPSSGCALSLLSSSKSDHSWLSPADLSARCSAALRELIDENRAASMAKQIILERDWHPHHNYHHQEEEDDDDHNNKEIQLQSNYNFSQHHQMFP 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4201g00003 381 Pfam SBP domain 185 258 IPR004333 GO:0003677
Pral4201g00003 381 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 109 319 IPR044817 GO:0003677
Pral4201g00003 381 MobiDBLite consensus disorder prediction 250 271 - -
Pral4201g00003 381 MobiDBLite consensus disorder prediction 94 122 - -
Pral4201g00003 381 ProSiteProfiles Zinc finger SBP-type profile. 182 259 IPR004333 GO:0003677
Pral4201g00003 381 SUPERFAMILY SBT domain 183 264 IPR036893 GO:0003677|GO:0005634
Pral4201g00003 381 Gene3D - 176 246 IPR036893 GO:0003677|GO:0005634
Pral4201g00003 381 FunFam Squamosa promoter-binding-like protein 14 176 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4201g00003 Pral-Chr4201 70432 73268 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4201g00003 133 258 SBP-box Gene Family AT1G27360 54.688 1.71e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4201g00003 SBP 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4201g00003 - - pcin:129291456 539.265