Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4197g00020 ATGATGGACGGAGTTCATGGCGGTATGGCGAGTTCTGCGGTGGCGAATGTGAATTCTCCGCCGCCATTCCTCAGCAAGACCTATGACATGGTCGACGACCCTTCCACAAACTTGGTGGTCTCATGGAGTGATAATAACAACAGCTTTGTTGTTTGGGATGTGCCCGAATTCGCTAGGGACATCTTGCCCAAGTATTTTAAGCACAACAATTTCTCCAGCTTCGTCAGGCAATTGAATACTTACGGTTTTAGAAAGGTTGATCCAGACCGCTGGGAATTTGCAAATGAAGGATTTTTGAGAGGTCAGAAACAACTTTTGAAGGGTATCAGTCGGAGGAAACCTGCTCAAGTGAACGGTAGTCAACAGCAATCTCCGGCACAGAACAAACCTGTTGCGGCATGTATTGAGGTTGGAAAGTTTGGGCTTGAAGAAGAGGTTGAAAGATTGAAAAGGGATAAGAATGTTCTTATGCAAGAACTTGTCAGGTTGAGACAACAACAACAAGCAACTGATAACCAATTGCAAAGTGTTGGGCAACGTGTACAGGTTATGGAGCAGCGTCAACAACAAATGATGTCATTTCTGGCAAAGGCCATGCAAAGCCCAGGATTCTTGGGACAGTTTGTACAGCAGCATAGTGACAGTAACAGACATATTACTGGTGGCAATAAAAAGAGGAGGCTTCACAGGCAGGATGAAGGTACATTACCCTCTGATCATCTCTATGATGCTCCTGATGGACGTGTTATTAAATATCAACCTTCTATGAATGAGGCTGCAAAAGCAGTATTGCGCCAGATATTGCAGATGAATACTTCTTCAAGGAGGGAATCATCAATAAATAACTCCGATGCTTTTCTCATTGATGATGTTCCTTCTGCCATTGCATTAGATAGTGGGAGTTCCTCTAGCCGGGCTTCAGGAGTGACTCTTTCTGAGGTTACACCTACTTCTGGCCCGTCTTATATGGCAGGGCAATCACAATTGCCTGTTAATCGTACTCCCACCAACACATCTGAGATGCAATCTTCCGGTGCTGTGTTGACAGACCCTGTTAAAGTAGCTGAATTTCCAGGATTAAATTTACATAATTGCCCAGAGAATGTTTTGGGTATTGGTGAAGTCCAAGGTGTGGAGACAGAGAGCAGTTTAGTGAATCCTGAACTCACTTTTGCGGGGCCTGACACTGGGAATGCGGGGGACATAGACATGATGTCAGCAGTTTTGGATGGGACACAGTCTGTAGAATTAGAAACTGATGCCTTTTCACCTGATCCAGATGGAATTTCTAAGCTCCCAAGCATTAGTGATGTTTTCTGGGAACAGTTTCTCACAGCAAGTCCGCTTACAGGCGATACAGATGAAATCAGTTCTTGCTCTCTTGGAGATGGTTTGACTAAGGAAGGCGAAGTTCCATCTAGAAGGGAGAATGGACAGGAAAAGTTGGATAAGATAAAACATATCGATCATCTTACTCAACAGATGGAACTTCTTGCTTCCAAAACTTCCTAA 1512 0.4418 MMDGVHGGMASSAVANVNSPPPFLSKTYDMVDDPSTNLVVSWSDNNNSFVVWDVPEFARDILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKGISRRKPAQVNGSQQQSPAQNKPVAACIEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQSVGQRVQVMEQRQQQMMSFLAKAMQSPGFLGQFVQQHSDSNRHITGGNKKRRLHRQDEGTLPSDHLYDAPDGRVIKYQPSMNEAAKAVLRQILQMNTSSRRESSINNSDAFLIDDVPSAIALDSGSSSSRASGVTLSEVTPTSGPSYMAGQSQLPVNRTPTNTSEMQSSGAVLTDPVKVAEFPGLNLHNCPENVLGIGEVQGVETESSLVNPELTFAGPDTGNAGDIDMMSAVLDGTQSVELETDAFSPDPDGISKLPSISDVFWEQFLTASPLTGDTDEISSCSLGDGLTKEGEVPSRRENGQEKLDKIKHIDHLTQQMELLASKTS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4197g00020 503 FunFam Heat shock transcription factor 1 16 113 - -
Pral4197g00020 503 MobiDBLite consensus disorder prediction 218 239 - -
Pral4197g00020 503 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4197g00020 503 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4197g00020 503 Coils Coil 139 166 - -
Pral4197g00020 503 MobiDBLite consensus disorder prediction 216 242 - -
Pral4197g00020 503 MobiDBLite consensus disorder prediction 114 129 - -
Pral4197g00020 503 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 317 IPR027725 -
Pral4197g00020 503 MobiDBLite consensus disorder prediction 111 130 - -
Pral4197g00020 503 MobiDBLite consensus disorder prediction 461 480 - -
Pral4197g00020 503 Gene3D - 15 113 IPR036388 -
Pral4197g00020 503 SUPERFAMILY "Winged helix" DNA-binding domain 18 112 IPR036390 -
Pral4197g00020 503 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4197g00020 503 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4197g00020 503 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4197g00020 503 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4197g00020 503 MobiDBLite consensus disorder prediction 299 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4197g00020 Pral-Chr4197 166785 171755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4197g00020 17 502 HSF AT5G16820 54.125 7.19e-157 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral4197g00020 HSF_DNA-bind 4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4197g00020 K09419 - qsa:O6P43_001765 615.535