Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4197g00014 ATGGAGTCTGGTGTCACATCAGAGGCATCAGATTCTAGTGAAATGAAGAAATCAAACAAAACAAGAGCAGTTGAAGTGTCTGGATGTGGAAGAGAAAAGGACACAACAGGCAAAGATATGTTGAGCAAACTGAGCAAAGTAGACTTGGCAGAACAAGAATGGGTCAATAAGATTCTAGAATGTCCTGTTTTCTGCCCATCAGAGCAGGAGTTTGAGGATCCTTTAGTTTATCTGCAGAAGATTGTTCCTCAGGCACAAAAATACGGAATATGCAAAATTGTTTCTCCTCTAAATGCCTCTATTCCAGCTGCTGTTGTCTTAACGAAAGAGAGAGAAAATTTCAAGTTTGAAACTATTGTACAACCTCTTCGGTTTTCTGAATTAAATGAGGACAATGAAACAACCTATTCTTTCAGAGGCAGAAAATACACTTACCGTGATTTCGAGACTTTGGCAAACAAGGCCTTTCTCAGTAGGTTTTACAGTTCAGGAAATCTTCCTTCTTCATATGTGGAAAAGTTATTCTGGCATGAGATGGAGCATGGAGAGACGGGAACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCTTTTTCATGTGATCCTAATGACAAGCTTGCAAAAAGCAAATGGAATTTGAAGAATTTCTCGCGGCTGCAGAAATCTACACTGCGGTTCATTGACCGAGACATTCCAGGAATAACTGACCCTATGCTTTATATTGGAATGCTATTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATTAACTACCATCACTCAGGAGCAAACAAAACTTGGTATGGCGTTCCCAGCTGTGCGGCCTCTCAATTTGAAGAGGTTGCCTTGGATCAGGTGTTCCACTATAAGATTTTATCAAAACATGATGGAAAGGCTGGTGCCTTTGAAGCTCTTTCTCATAAAACAACCATGTTTTCTCCAAATGTGTTGCTCCAGCATGGTGTGCCAGTTTATAAGGCTGTGCAGAAGCCTGGGGAGTTTGTCATCACCTTTCCTAAAGCATATCATGCTGGATTTAGTCATGGATTCAACTGTGGAGAAGCAGTAAACTTTGCAGTGAGTGATTGGTTTCCATTAGGGGCTGAAGCTACAAGGCGTTATGCACATCTTGGAAAGATGCCTATGATTCCCTTTGAGGAACTTCTTTGTAATGAGGCAATGCTAATTTACAAGGCCCCAAATCTCAAAGGTTCAAATAACAAACTCAATTTGGAATCCGACCATGCTACTAAGCTATCTTTTATGCAGCTCATGCGATTTTACGACGAGGCTCTTTCAAGACTGGAGAGTTCAATAAAGTATTCAAGTTCTTCAAATTTTCTTGGTACTGTGGTATGCAGCCTCTGCTGTAGAGACTGTTATGTGGCTTTCTTTCTCTGCAAGTACTGCTTTACTCATCCCATTTGTATTTCCCATGATGAAATTGAGACTCAGAATTGCAAATGCGGCAGGCAATGCACACTTTTCAAGAGAGATGAAATGTTGGCACTGATGGATGCTGCCACAAGTTTTGACCTGGAAAAAGACATTTTGTTGGAAGTTCAAAGACATAGTGGAGCAAATATACTGTCACAGGCATTCTTTTACACTGACTAA 1629 0.4058 MESGVTSEASDSSEMKKSNKTRAVEVSGCGREKDTTGKDMLSKLSKVDLAEQEWVNKILECPVFCPSEQEFEDPLVYLQKIVPQAQKYGICKIVSPLNASIPAAVVLTKERENFKFETIVQPLRFSELNEDNETTYSFRGRKYTYRDFETLANKAFLSRFYSSGNLPSSYVEKLFWHEMEHGETGTVEYGVNVEGSAFSCDPNDKLAKSKWNLKNFSRLQKSTLRFIDRDIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSCAASQFEEVALDQVFHYKILSKHDGKAGAFEALSHKTTMFSPNVLLQHGVPVYKAVQKPGEFVITFPKAYHAGFSHGFNCGEAVNFAVSDWFPLGAEATRRYAHLGKMPMIPFEELLCNEAMLIYKAPNLKGSNNKLNLESDHATKLSFMQLMRFYDEALSRLESSIKYSSSSNFLGTVVCSLCCRDCYVAFFLCKYCFTHPICISHDEIETQNCKCGRQCTLFKRDEMLALMDAATSFDLEKDILLEVQRHSGANILSQAFFYTD 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4197g00014 542 PANTHER LYSINE-SPECIFIC DEMETHYLASE 53 510 - -
Pral4197g00014 542 MobiDBLite consensus disorder prediction 13 34 - -
Pral4197g00014 542 Pfam JmjC domain, hydroxylase 238 362 IPR003347 -
Pral4197g00014 542 Pfam jmjN domain 62 94 IPR003349 -
Pral4197g00014 542 SUPERFAMILY Clavaminate synthase-like 139 397 - -
Pral4197g00014 542 SMART JmjN_1 60 101 IPR003349 -
Pral4197g00014 542 MobiDBLite consensus disorder prediction 1 34 - -
Pral4197g00014 542 SMART cupin_9 205 379 IPR003347 -
Pral4197g00014 542 ProSiteProfiles JmjC domain profile. 205 379 IPR003347 -
Pral4197g00014 542 Gene3D Cupin 61 426 - -
Pral4197g00014 542 ProSiteProfiles JmjN domain profile. 61 102 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4197g00014 Pral-Chr4197 125812 129138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4197g00014 58 511 JUMONJI Transcription Factor Family AT2G34880 32.955 1.87e-64 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral4197g00014 JmjC 9e-42 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4197g00014 - - pcin:129313895 942.954