Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4193g00067 ATGGAGACTCAGTACACTCTCTTCGACAGGCATCCCATCATCAAGTCTAAGACTCCCGCCGTTAAATGGGTTAAAGAATGGGTTCCCCAGGATGTTGTGGCCACTGGTGGGAAGTGCATGCTTTTCAGATGGGTAAGAGAGGATTCCTTAAAGGCCTTGAAGGATAAGGAAAAAGAACCATCAGTTCCTGAGCCAGAACCTGAGCCAACAACCGAAGTACTTTTTCTCTGCAGCTACGAAGGCTGTGGGAAAACTTTTATAGATGCTGGTGCTTTGAGAAAACATTCTCACATCCATGGAGAAAGACAATTTGTCTGTCACTATGAGGGTTGTGGAAAGAAATTTCTGGATAGTTCAAAGCTGAAAAGACATTTTCTCATCCATACTGGGGAAAGGGCTTATGTATGTCCCATTGAAGGCTGTGGTAAGGCCTTCTCCCTCGATTTCAACCTAAAGTCTCACATGAAAACACATTCACATGAGAACTACCATGTCTGCAAATACCCAGATTGTGGGAAGAGATATGCTCATGAATACAAGCTTAAAAATCACATTGCAGCACACCATGAAAAGAATGGATCTGTAGATCCCAATGGGACAAAGTATAATACTCCACCTGCCGAGAAGCCGACAAAAGCTGCGAAACCTTCTGGGGGTGCTTATGCTTCTGCATCGTCTGATCGTCCGTTTGTTTGTCCTTATGAAGGGTGTGAAAAGGCCTATATCCATGAATATAAACTTAAACTCCATTTGAAGAGGGAGCATCCTGGGCATGGTGATGAAAATGTTGCAGAGAATGCTCAGGCTAATAACAATGCTGACAACGAATTAGATGAAGCAAGCGATCAAGATGCCTATGGTGGCAAAAGGTCAAATGGTAGGATTCAGAAGCAAAGTAAGGCCAAACCAAACTTGAAGTTGCCTCCAACAAAAATTGCCCGGCGCAAAGCAACGTCAACACCCTCTTCTGTAACCCCTATGAAGGTGATTAAGAAACCTTGGCCGGTGAAAGAAGAAAACTACGAGGAAGAAGACAGTGAAGAAACAGAGGAAGATCGAGACAACGTTGAAGATGGTTGGAGATATGCAGGAAACAACGAGGATGATGATGAAGAAACAGAATACGAAGACTGA 1134 0.4374 METQYTLFDRHPIIKSKTPAVKWVKEWVPQDVVATGGKCMLFRWVREDSLKALKDKEKEPSVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERAYVCPIEGCGKAFSLDFNLKSHMKTHSHENYHVCKYPDCGKRYAHEYKLKNHIAAHHEKNGSVDPNGTKYNTPPAEKPTKAAKPSGGAYASASSDRPFVCPYEGCEKAYIHEYKLKLHLKREHPGHGDENVAENAQANNNADNELDEASDQDAYGGKRSNGRIQKQSKAKPNLKLPPTKIARRKATSTPSSVTPMKVIKKPWPVKEENYEEEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4193g00067 377 SUPERFAMILY beta-beta-alpha zinc fingers 115 167 IPR036236 -
Pral4193g00067 377 Gene3D Classic Zinc Finger 101 132 - -
Pral4193g00067 377 Gene3D Classic Zinc Finger 163 193 - -
Pral4193g00067 377 Gene3D Classic Zinc Finger 133 162 - -
Pral4193g00067 377 Coils Coil 263 283 - -
Pral4193g00067 377 Gene3D Classic Zinc Finger 75 100 - -
Pral4193g00067 377 ProSitePatterns Zinc finger C2H2 type domain signature. 166 189 IPR013087 -
Pral4193g00067 377 FunFam Zinc finger transcription factor YY1 205 272 - -
Pral4193g00067 377 Pfam Zinc finger, C2H2 type 134 158 IPR013087 -
Pral4193g00067 377 MobiDBLite consensus disorder prediction 275 377 - -
Pral4193g00067 377 FunFam Putative zinc finger protein 143 101 131 - -
Pral4193g00067 377 SUPERFAMILY beta-beta-alpha zinc fingers 225 253 IPR036236 -
Pral4193g00067 377 Gene3D Classic Zinc Finger 205 274 - -
Pral4193g00067 377 ProSitePatterns Zinc finger C2H2 type domain signature. 136 160 IPR013087 -
Pral4193g00067 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 193 IPR013087 -
Pral4193g00067 377 FunFam zinc finger transcription factor YY1 75 100 - -
Pral4193g00067 377 SMART c2h2final6 75 99 IPR013087 -
Pral4193g00067 377 SMART c2h2final6 134 158 IPR013087 -
Pral4193g00067 377 SMART c2h2final6 230 255 IPR013087 -
Pral4193g00067 377 SMART c2h2final6 104 128 IPR013087 -
Pral4193g00067 377 SMART c2h2final6 164 188 IPR013087 -
Pral4193g00067 377 MobiDBLite consensus disorder prediction 340 354 - -
Pral4193g00067 377 ProSitePatterns Zinc finger C2H2 type domain signature. 232 255 IPR013087 -
Pral4193g00067 377 ProSitePatterns Zinc finger C2H2 type domain signature. 77 99 IPR013087 -
Pral4193g00067 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 133 IPR013087 -
Pral4193g00067 377 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 16 352 - -
Pral4193g00067 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 260 IPR013087 -
Pral4193g00067 377 FunFam zinc finger transcription factor YY1 161 192 - -
Pral4193g00067 377 ProSitePatterns Zinc finger C2H2 type domain signature. 106 128 IPR013087 -
Pral4193g00067 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 163 IPR013087 -
Pral4193g00067 377 FunFam Zinc finger protein 410 132 159 - -
Pral4193g00067 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 104 IPR013087 -
Pral4193g00067 377 MobiDBLite consensus disorder prediction 188 227 - -
Pral4193g00067 377 SUPERFAMILY beta-beta-alpha zinc fingers 78 128 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4193g00067 Pral-Chr4193 567495 572000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4193g00067 8 363 C2H2 Transcription Factor Family AT4G06634 63.342 2.03e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4193g00067 zf-C2H2 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4193g00067 - - pcin:129287230 681.789