Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4193g00066 ATGGGTTCCCCAGGATGTTGTGGCCACTGGTGGGAAGTGCATGCTTTTCAGATGGAGGATTCCTTAAAGGCCTTGAAGGATAAGGAAAAAGAACCATCAGTTCCTGAGCCAGAACCTGAGCCAACAACCGAAGTACTTTTTCTCTGCAGCTACGAAGGCTGTGGGAAAACTTTTATAGATGCTGGTGCTTTGAGAAAACATTCTCACATCCATGGAGAAAGACAATTTGTCTGTCACTATGAGGGTTGTGGAAAGAAATTTCTGGATAGTTCAAAGCTGAAAAGACATTTTCTCATCCATACTGGGGAAAGGGCTTATGTATGTCCCATTGAAGGCTGTGGTAAGGCCTTCTCCCTCGATTTCAACCTAAAGTCTCACATGAAAACACATTCACATGAGAACTACCATGTCTGCAAATACCCAGATTGTGGGAAGAGATATGCTCATGAATACAAGCTTAAAAATCACATTGCAGCACACCATGAAAAGAATGGATCTGTAGATCCCAATGGGACAAAGTATAATACTCCACCTGCCGAGAAGCCGACAAAAGCTGCGAAACCTTCTGGGGGTGCTTATGCTTCTGCATCGTCTGATCGTCCGTTTGTTTGTCCTTATGAAGGGTGTGAAAAGGCCTATATCCATGAATATAAACTTAAACTCCATTTGAAGAGGGAGCATCCTGGGCATGGTGATGAAAATGTTGCAGAGAATGCTCAGGCTAATAACAATGCTGACAACGAATTAGATGAAGCAAGCGATCAAGATGCCTATGGTGGCAAAAGGTCAAATGGTAGGATTCAGAAGCAAAGTAAGGCCAAACCAAACTTGAAGTTGCCTCCAACAAAAATTGCCCGGCGCAAAGCAACGTCAACACCCTCTTCTGTAACCCCTATGAAGGTGATTAAGAAACCTTGGCCGGTGAAAGAAGAAAACTACGAGGAAGAAGACAGTGAAGAAACAGAGGAAGATCGAGACAACGTTGAAGATGGTTGGAGATATGCAGGAAACAACGAGGATGATGATGAAGAAACAGAATACGAAGACTGA 1050 0.4352 MGSPGCCGHWWEVHAFQMEDSLKALKDKEKEPSVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERAYVCPIEGCGKAFSLDFNLKSHMKTHSHENYHVCKYPDCGKRYAHEYKLKNHIAAHHEKNGSVDPNGTKYNTPPAEKPTKAAKPSGGAYASASSDRPFVCPYEGCEKAYIHEYKLKLHLKREHPGHGDENVAENAQANNNADNELDEASDQDAYGGKRSNGRIQKQSKAKPNLKLPPTKIARRKATSTPSSVTPMKVIKKPWPVKEENYEEEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4193g00066 349 ProSitePatterns Zinc finger C2H2 type domain signature. 138 161 IPR013087 -
Pral4193g00066 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Pral4193g00066 349 MobiDBLite consensus disorder prediction 312 326 - -
Pral4193g00066 349 Gene3D Classic Zinc Finger 105 134 - -
Pral4193g00066 349 Gene3D Classic Zinc Finger 73 104 - -
Pral4193g00066 349 Gene3D Classic Zinc Finger 135 165 - -
Pral4193g00066 349 ProSitePatterns Zinc finger C2H2 type domain signature. 78 100 IPR013087 -
Pral4193g00066 349 FunFam Zinc finger protein 410 104 131 - -
Pral4193g00066 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 232 IPR013087 -
Pral4193g00066 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Pral4193g00066 349 FunFam Putative zinc finger protein 143 73 103 - -
Pral4193g00066 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 76 IPR013087 -
Pral4193g00066 349 SUPERFAMILY beta-beta-alpha zinc fingers 197 225 IPR036236 -
Pral4193g00066 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 105 IPR013087 -
Pral4193g00066 349 Gene3D Classic Zinc Finger 47 72 - -
Pral4193g00066 349 MobiDBLite consensus disorder prediction 160 199 - -
Pral4193g00066 349 Gene3D Classic Zinc Finger 172 246 - -
Pral4193g00066 349 Pfam Zinc finger, C2H2 type 106 130 IPR013087 -
Pral4193g00066 349 ProSitePatterns Zinc finger C2H2 type domain signature. 108 132 IPR013087 -
Pral4193g00066 349 FunFam zinc finger transcription factor YY1 47 72 - -
Pral4193g00066 349 Coils Coil 235 255 - -
Pral4193g00066 349 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 28 324 - -
Pral4193g00066 349 SUPERFAMILY beta-beta-alpha zinc fingers 87 139 IPR036236 -
Pral4193g00066 349 MobiDBLite consensus disorder prediction 247 349 - -
Pral4193g00066 349 FunFam zinc finger transcription factor YY1 133 164 - -
Pral4193g00066 349 FunFam Zinc finger transcription factor YY1 177 244 - -
Pral4193g00066 349 SUPERFAMILY beta-beta-alpha zinc fingers 50 100 IPR036236 -
Pral4193g00066 349 ProSitePatterns Zinc finger C2H2 type domain signature. 204 227 IPR013087 -
Pral4193g00066 349 SMART c2h2final6 76 100 IPR013087 -
Pral4193g00066 349 SMART c2h2final6 136 160 IPR013087 -
Pral4193g00066 349 SMART c2h2final6 47 71 IPR013087 -
Pral4193g00066 349 SMART c2h2final6 106 130 IPR013087 -
Pral4193g00066 349 SMART c2h2final6 202 227 IPR013087 -
Pral4193g00066 349 ProSitePatterns Zinc finger C2H2 type domain signature. 49 71 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4193g00066 Pral-Chr4193 567495 572006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4193g00066 10 335 C2H2 Transcription Factor Family AT4G06634 62.757 1.57e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4193g00066 zf-C2H2 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4193g00066 - - pcin:129287230 589.726