Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4193g00064 ATGTCTGGAATTAACTTGAACAATAACATTCCGGTGATGGCTTTCAAGCAAGAAGTGGTCTACTTGGAGTGTCTCCATAACCATGCAGCCTCCCTCGGTAAAGTAGCCACAGATGGCTGCTTTGAGTTTCTGCAACGTAACTTAGACGATATTGTTGCCGACGACCAGCACGGTGGCTCATCGGAGGCGTTGCTTTGTGCAGTTTGCAACTGTCACAGGAACTTTCACCGGAAACAATTTGTCTATACTCCGATCATGACAATTGACACCGCGGTAACTATCCTGCCGCAGCAAAACCACCAACAGCCAAACTTTCCGGCAACTGCAGTGGCTGCTGCTGATGAGGGAAATGCGGCCGGGGAGATCAATAACGATGACAACGCTGTGGCGTTGGTGCCGCCGTCGCCGACGAGGAAGAGGAAGAGGAGGACCCAGTTCACAGATGAGCAACGGAGTCGAATGGCGAGTTTTGCAGAGAGGTTGGGTTGGAGGCTTAAGAGATCAAACAAGGAGGAGATCCTCAGTTTTTGCATGGAAATAGGGGTCAGTCGTAGGATGTTTGTTGTTTGGGTTAGCAACAACCGACCAAAAGTGGATGAACATCAAACTGATGAGTGA 618 0.4968 MSGINLNNNIPVMAFKQEVVYLECLHNHAASLGKVATDGCFEFLQRNLDDIVADDQHGGSSEALLCAVCNCHRNFHRKQFVYTPIMTIDTAVTILPQQNHQQPNFPATAVAAADEGNAAGEINNDDNAVALVPPSPTRKRKRRTQFTDEQRSRMASFAERLGWRLKRSNKEEILSFCMEIGVSRRMFVVWVSNNRPKVDEHQTDE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4193g00064 205 SUPERFAMILY Homeodomain-like 133 198 IPR009057 -
Pral4193g00064 205 Pfam ZF-HD protein dimerisation region 19 79 IPR006456 -
Pral4193g00064 205 ProSiteProfiles 'Homeobox' domain profile. 137 201 IPR001356 GO:0003677
Pral4193g00064 205 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 79 IPR006456 -
Pral4193g00064 205 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 79 IPR006456 -
Pral4193g00064 205 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 195 - -
Pral4193g00064 205 MobiDBLite consensus disorder prediction 126 147 - -
Pral4193g00064 205 Gene3D - 132 200 - -
Pral4193g00064 205 NCBIfam homeobox domain, ZF-HD class 139 195 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4193g00064 Pral-Chr4193 560581 561198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4193g00064 16 195 ZF-HD Transcription Factor Family AT1G14440 37.186 1.97e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral4193g00064 ZF-HD_dimer 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4193g00064 - - pcin:129285637 206.838