Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral4193g00052 | ATGAGGCAAGGTCAAACCAATTCAGCCAGTGATGGGCTTCCTAAAGTCAATTGGTTGGATCATGCCAGCGCACACGAGAACTTTTCATGTCAAAACAGTTTTTTGACTTCCAACTTCCTATTCTCCTTGCCAACTCAAAAACCATGCTCAGAAGAAGCTTTGCGTGGGAGATTTGTACTCTATCAAAATCAAAACATTCAAAGGTTGCAGAGAGCGCACATTGAGAAGGCTTGGTGTGCTCTTTCTAGTCTACAGAATTCTTGCAGAAACTATGCCAAACCGGGAAAAACTGCCCAAATCAGTCCTCCAATTCTTGCAGACAAGAGAACAACTACCTGGCAGAGAAGTTCTGAGAATGATAGATGTTCTCAGTTTTATAATTTTAACGTCTCAAGTGAAAACAATGTGAAATCTAATCAATGCTTTCCATCAAGTAATCCTACAGCCGAAGGAGGGGATAGTTTGAGGTGCCTCGATGAAGCCACAACTCCAACAGTCAGTAACCACTGTTCTCGAGTTTTGGATGGTTCAGTGAACAACCGTCCAAAGTATACTGCTGAAGTTAACGGGTCAACAAATTGTATGGCTGCCAAAATTGATGAGGATGATGATGATATACTTGGGAACATTGATGTTGACCAAATAGTGGAAAACTACCAGTCAACTTGCACTCCTCAACCATCAATAGCCAAGTTTCCGCCTATTACTCCTACTGTTGATGCAAAGAGTTTTGCTAGACAAGGGGAACATGGTTTGCCTCTGGAGTTGTGCTCAGATTGCATTCATGGTTATAAGGTAGCGCTTTGCCCTGAAGCAGCAAACCATTTGCAGGAATGGAAGGACAATCTGATTGCTATCTCCAATGAACTGCTTGACAATGTTGACAGCCTCAATTCTTCACAGATAGCAAAGCTTCGTCAAGACAGGTCACAGTTAAATAAGCAGATTCAGCAACTCGAAAGATATATTCATTCCTGTAAGCTTGATGTGGAAAGACAAAACTCACATTTTTCGGCATCCACAGCACCTCCAACTTCTTTTCAGTTTGAGAGACCAAATCAAACTGAACTCAGGAGTGGATCAATGAGATATGATAACCAGGCTTATATGAGTAATGAGCCATGTGGAGCTTCATTCCAGTCATTTTCATTCTCTGCTGTTGATAAGTATGGCATGTCGTCAGGCCCAATGGAGAGAGAAACATTTATTCCTAAGATTATTGATGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCGACCAAAATTTTCCTTGGACAAAAAAGCTGGAGGCCAACAATAAAAAGGTTTTTGGAAATCATTCATTCCGCCCCAATCAGAGAGAGGTTATTAATGCTACAATGAGCGGATATGATGTTTTTGTCTTAATGCCTACGGGTGGAGGGAAGAGTCTGACCTACCAGCTCCCTGCTCTTATTTGTCCAGGTATAACTTTAGTAATCTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTGCTGCAGGCAAATATCCCTGCTACATACTTGAGTTCCAATATGGATTGGTCTGAACAGCAGGAGATCCTGAGAGAAATTAATTCTGATTATTGTAAATACAAGTTTTTATATGTAACACCTGAAAAAGTTGCCAAAAGTGATGTTCTTTTGCGGCAATTGGAGAGTTTGCATGTTCGTGAGTTGCTTGCTAGGATTGTAATTGATGAAGCTCATTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGCCTTGGTATATTGAAACAAAAGTTTCCAAATACTCCTGTTCTGGCTTTGACAGCTACAGCAACAGCCAGCGTAAAAGAAGATGTTGTTCAAGCTCTTGGTCTTGTCAACTGCATTGTTTTCCGGCAAAGTTTTAATCGCCCAAACTTATGGTACTCTGTTGTCCCCAAGACAAGAAAGTGTTTGGAGGACATTGATAAATTCATCAGGGAAAATCACTATGACGAATGTGGCATTATTTATTGTCTTTCACGAATTGACTGTGAAAAAGTTGCTGAAAAATTACAGGAATGTGGACATAAAACTGCATTTTATCATGGAAGCATGGATCCTGCTCAACGAACATTTGTTCAAAAGCAATGGAGCAAAGATGAAATCAATATAATGTGTGCTACTGTGGCATTTGGAATGGGAATTAACAAACCTGATGTTCGCTTTGTAATTCATCACTCTCTCCCAAAATCTATTGAAGGATACCACCAGGAGTGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGCATATTATATTATAGCTATAGTGACTATATACGAGTTAAGCACATGATAACTCAAGGAGCAATAGAGCAAAGCCCAATGACATCTGGATATAATCGATCTAATTTGACAAATTCAAGGATGCTAGAGACTAACACTGGAAACCTTCTGCGGATGGTAAGCTATTGTGAAAATGATGGTGATTGTAGACGACTTCTGCAGCTTGCTCATTTCGGGGAGAGGTTTGATCCTGCAAACTGTAAGAAAACATGTGATAACTGTCTGAAGATCAAGAGTTTTATTGAGAAGGATGTCACAGAGATCGCAAAGCAATTGGTTGAGCTAGTTAAGATAACGGGGCAGAATTTTTCATCATCTCATATCTTAGAAGTGTACCGTGGTTCCTTAAACCAGTTTGTCAAGAAACACCGGCATGAAACAGTACGGCTTCATGGTGCTGGGAAGCATCTAGCTAAGGGAGAGGCTTCCCGTGTGTTGCATCATCTTGTTATTCAAGATTTTCTTGCGGAGGATGTAAAGAAAAGTGATATTTATGGATCAATTTCATCAATATTAAAGGTCAATGAGTCCAAGGCCCGTAATCTGTTTGGTGGCCAGAAAATTATATTAAGAGTTCCTTCCTCGGAAAAAGCATCAAAGCTGGGAACTCCAGGAATAACACCAGCTAAAGGCTCTCTGATATCTGGGAAGGCGAATTTTCCACAAAATGATCCTCCTGCCTCACCTCAAACTGAAGTGGACTTGAATCTTTCCGCTAAGTTGTTCACTGCTCTGCGGCTCCTGCGGACAACTATTGTCAAAGAAGCTGGAGAGGGTGTCATGGCCTACCACATTTTTGGAAATGCGACGCTGCAGCAGATAAGCAAGAGAATACCGAGAACAAAGGAAGAGCTCCTTGAGATCAATGGCATTAGCAAGGCCAAGGTAAGCAAGTATGGAGATCGGTTACTGGAAACCATTGAAAATACCATAAGGGAATATCACAAGTCGGACAAAAGCAACAGCTGGAGCAACGAGAGTAATGATTCTGCTAAAAGGAGACGAGACCAAAACGTAAAAGGGGATGATGATGAGTGCACTAGAAGTAATGGTCGTTCAAAGAAAAGGACGGTAAAGAGAAAGAATACAAATGCTGTGGTTTATGATTCTGCGGAAGAAGATTATTTTAAAGATTGCCTAGATGAAGATCTAGATTTTGACAATATAGAAAATACTGCATTGGATATAAATCGTAGGAATTCTGAAGGAAGAGTCCTTCCTCAATGGACATCCTGA | 3561 | 0.4089 | MRQGQTNSASDGLPKVNWLDHASAHENFSCQNSFLTSNFLFSLPTQKPCSEEALRGRFVLYQNQNIQRLQRAHIEKAWCALSSLQNSCRNYAKPGKTAQISPPILADKRTTTWQRSSENDRCSQFYNFNVSSENNVKSNQCFPSSNPTAEGGDSLRCLDEATTPTVSNHCSRVLDGSVNNRPKYTAEVNGSTNCMAAKIDEDDDDILGNIDVDQIVENYQSTCTPQPSIAKFPPITPTVDAKSFARQGEHGLPLELCSDCIHGYKVALCPEAANHLQEWKDNLIAISNELLDNVDSLNSSQIAKLRQDRSQLNKQIQQLERYIHSCKLDVERQNSHFSASTAPPTSFQFERPNQTELRSGSMRYDNQAYMSNEPCGASFQSFSFSAVDKYGMSSGPMERETFIPKIIDVNYIEGSGDKRWSDQNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATYLSSNMDWSEQQEILREINSDYCKYKFLYVTPEKVAKSDVLLRQLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVPKTRKCLEDIDKFIRENHYDECGIIYCLSRIDCEKVAEKLQECGHKTAFYHGSMDPAQRTFVQKQWSKDEINIMCATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCILYYSYSDYIRVKHMITQGAIEQSPMTSGYNRSNLTNSRMLETNTGNLLRMVSYCENDGDCRRLLQLAHFGERFDPANCKKTCDNCLKIKSFIEKDVTEIAKQLVELVKITGQNFSSSHILEVYRGSLNQFVKKHRHETVRLHGAGKHLAKGEASRVLHHLVIQDFLAEDVKKSDIYGSISSILKVNESKARNLFGGQKIILRVPSSEKASKLGTPGITPAKGSLISGKANFPQNDPPASPQTEVDLNLSAKLFTALRLLRTTIVKEAGEGVMAYHIFGNATLQQISKRIPRTKEELLEINGISKAKVSKYGDRLLETIENTIREYHKSDKSNSWSNESNDSAKRRRDQNVKGDDDECTRSNGRSKKRTVKRKNTNAVVYDSAEEDYFKDCLDEDLDFDNIENTALDINRRNSEGRVLPQWTS | 1186 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral4193g00052 | 1186 | ProSiteProfiles | HRDC domain profile. | 1010 | 1092 | IPR002121 | GO:0003676 | |
Pral4193g00052 | 1186 | Gene3D | - | 635 | 852 | IPR027417 | - | |
Pral4193g00052 | 1186 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 652 | 804 | IPR001650 | - | |
Pral4193g00052 | 1186 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 633 | 900 | IPR027417 | - | |
Pral4193g00052 | 1186 | CDD | DEXHc_RecQ | 432 | 634 | - | - | |
Pral4193g00052 | 1186 | MobiDBLite | consensus disorder prediction | 1090 | 1127 | - | - | |
Pral4193g00052 | 1186 | NCBIfam | RecQ family ATP-dependent DNA helicase | 436 | 910 | IPR004589 | GO:0004386|GO:0006310 | |
Pral4193g00052 | 1186 | FunFam | ATP-dependent DNA helicase RecQ | 417 | 634 | - | - | |
Pral4193g00052 | 1186 | FunFam | Bloom syndrome, RecQ helicase | 635 | 854 | - | - | |
Pral4193g00052 | 1186 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 416 | 1100 | - | - | |
Pral4193g00052 | 1186 | Gene3D | - | 857 | 966 | IPR036388 | - | |
Pral4193g00052 | 1186 | Gene3D | HRDC domain | 1006 | 1094 | IPR044876 | - | |
Pral4193g00052 | 1186 | Pfam | HRDC domain | 1014 | 1082 | IPR002121 | GO:0003676 | |
Pral4193g00052 | 1186 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 419 | 776 | IPR027417 | - | |
Pral4193g00052 | 1186 | SMART | RQC_2 | 859 | 969 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Pral4193g00052 | 1186 | SMART | ultradead3 | 440 | 643 | IPR014001 | - | |
Pral4193g00052 | 1186 | Pfam | RQC domain | 856 | 972 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Pral4193g00052 | 1186 | SMART | hrdc7 | 1010 | 1092 | IPR002121 | GO:0003676 | |
Pral4193g00052 | 1186 | Coils | Coil | 302 | 322 | - | - | |
Pral4193g00052 | 1186 | SMART | helicmild6 | 677 | 758 | IPR001650 | - | |
Pral4193g00052 | 1186 | Pfam | RecQ zinc-binding | 769 | 850 | IPR032284 | - | |
Pral4193g00052 | 1186 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 566 | 575 | IPR002464 | - | |
Pral4193g00052 | 1186 | Pfam | DEAD/DEAH box helicase | 446 | 614 | IPR011545 | GO:0003676|GO:0005524 | |
Pral4193g00052 | 1186 | Pfam | Helicase conserved C-terminal domain | 651 | 757 | IPR001650 | - | |
Pral4193g00052 | 1186 | SUPERFAMILY | HRDC-like | 1013 | 1085 | IPR010997 | GO:0000166|GO:0044237 | |
Pral4193g00052 | 1186 | CDD | SF2_C_RecQ | 635 | 767 | - | - | |
Pral4193g00052 | 1186 | MobiDBLite | consensus disorder prediction | 1090 | 1136 | - | - | |
Pral4193g00052 | 1186 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 452 | 627 | IPR014001 | - | |
Pral4193g00052 | 1186 | Gene3D | - | 409 | 634 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral4193g00052 | Pral-Chr4193 | 442441 | 451176 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral4193g00052 | 666 | 789 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 25.197 | 3.04e-07 | 52.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral4193g00052 | K10901 | - | qsa:O6P43_031507 | 1685.23 |