Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4193g00052 ATGAGGCAAGGTCAAACCAATTCAGCCAGTGATGGGCTTCCTAAAGTCAATTGGTTGGATCATGCCAGCGCACACGAGAACTTTTCATGTCAAAACAGTTTTTTGACTTCCAACTTCCTATTCTCCTTGCCAACTCAAAAACCATGCTCAGAAGAAGCTTTGCGTGGGAGATTTGTACTCTATCAAAATCAAAACATTCAAAGGTTGCAGAGAGCGCACATTGAGAAGGCTTGGTGTGCTCTTTCTAGTCTACAGAATTCTTGCAGAAACTATGCCAAACCGGGAAAAACTGCCCAAATCAGTCCTCCAATTCTTGCAGACAAGAGAACAACTACCTGGCAGAGAAGTTCTGAGAATGATAGATGTTCTCAGTTTTATAATTTTAACGTCTCAAGTGAAAACAATGTGAAATCTAATCAATGCTTTCCATCAAGTAATCCTACAGCCGAAGGAGGGGATAGTTTGAGGTGCCTCGATGAAGCCACAACTCCAACAGTCAGTAACCACTGTTCTCGAGTTTTGGATGGTTCAGTGAACAACCGTCCAAAGTATACTGCTGAAGTTAACGGGTCAACAAATTGTATGGCTGCCAAAATTGATGAGGATGATGATGATATACTTGGGAACATTGATGTTGACCAAATAGTGGAAAACTACCAGTCAACTTGCACTCCTCAACCATCAATAGCCAAGTTTCCGCCTATTACTCCTACTGTTGATGCAAAGAGTTTTGCTAGACAAGGGGAACATGGTTTGCCTCTGGAGTTGTGCTCAGATTGCATTCATGGTTATAAGGTAGCGCTTTGCCCTGAAGCAGCAAACCATTTGCAGGAATGGAAGGACAATCTGATTGCTATCTCCAATGAACTGCTTGACAATGTTGACAGCCTCAATTCTTCACAGATAGCAAAGCTTCGTCAAGACAGGTCACAGTTAAATAAGCAGATTCAGCAACTCGAAAGATATATTCATTCCTGTAAGCTTGATGTGGAAAGACAAAACTCACATTTTTCGGCATCCACAGCACCTCCAACTTCTTTTCAGTTTGAGAGACCAAATCAAACTGAACTCAGGAGTGGATCAATGAGATATGATAACCAGGCTTATATGAGTAATGAGCCATGTGGAGCTTCATTCCAGTCATTTTCATTCTCTGCTGTTGATAAGTATGGCATGTCGTCAGGCCCAATGGAGAGAGAAACATTTATTCCTAAGATTATTGATGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCGACCAAAATTTTCCTTGGACAAAAAAGCTGGAGGCCAACAATAAAAAGGTTTTTGGAAATCATTCATTCCGCCCCAATCAGAGAGAGGTTATTAATGCTACAATGAGCGGATATGATGTTTTTGTCTTAATGCCTACGGGTGGAGGGAAGAGTCTGACCTACCAGCTCCCTGCTCTTATTTGTCCAGGTATAACTTTAGTAATCTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTGCTGCAGGCAAATATCCCTGCTACATACTTGAGTTCCAATATGGATTGGTCTGAACAGCAGGAGATCCTGAGAGAAATTAATTCTGATTATTGTAAATACAAGTTTTTATATGTAACACCTGAAAAAGTTGCCAAAAGTGATGTTCTTTTGCGGCAATTGGAGAGTTTGCATGTTCGTGAGTTGCTTGCTAGGATTGTAATTGATGAAGCTCATTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGCCTTGGTATATTGAAACAAAAGTTTCCAAATACTCCTGTTCTGGCTTTGACAGCTACAGCAACAGCCAGCGTAAAAGAAGATGTTGTTCAAGCTCTTGGTCTTGTCAACTGCATTGTTTTCCGGCAAAGTTTTAATCGCCCAAACTTATGGTACTCTGTTGTCCCCAAGACAAGAAAGTGTTTGGAGGACATTGATAAATTCATCAGGGAAAATCACTATGACGAATGTGGCATTATTTATTGTCTTTCACGAATTGACTGTGAAAAAGTTGCTGAAAAATTACAGGAATGTGGACATAAAACTGCATTTTATCATGGAAGCATGGATCCTGCTCAACGAACATTTGTTCAAAAGCAATGGAGCAAAGATGAAATCAATATAATGTGTGCTACTGTGGCATTTGGAATGGGAATTAACAAACCTGATGTTCGCTTTGTAATTCATCACTCTCTCCCAAAATCTATTGAAGGATACCACCAGGAGTGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGCATATTATATTATAGCTATAGTGACTATATACGAGTTAAGCACATGATAACTCAAGGAGCAATAGAGCAAAGCCCAATGACATCTGGATATAATCGATCTAATTTGACAAATTCAAGGATGCTAGAGACTAACACTGGAAACCTTCTGCGGATGGTAAGCTATTGTGAAAATGATGGTGATTGTAGACGACTTCTGCAGCTTGCTCATTTCGGGGAGAGGTTTGATCCTGCAAACTGTAAGAAAACATGTGATAACTGTCTGAAGATCAAGAGTTTTATTGAGAAGGATGTCACAGAGATCGCAAAGCAATTGGTTGAGCTAGTTAAGATAACGGGGCAGAATTTTTCATCATCTCATATCTTAGAAGTGTACCGTGGTTCCTTAAACCAGTTTGTCAAGAAACACCGGCATGAAACAGTACGGCTTCATGGTGCTGGGAAGCATCTAGCTAAGGGAGAGGCTTCCCGTGTGTTGCATCATCTTGTTATTCAAGATTTTCTTGCGGAGGATGTAAAGAAAAGTGATATTTATGGATCAATTTCATCAATATTAAAGGTCAATGAGTCCAAGGCCCGTAATCTGTTTGGTGGCCAGAAAATTATATTAAGAGTTCCTTCCTCGGAAAAAGCATCAAAGCTGGGAACTCCAGGAATAACACCAGCTAAAGGCTCTCTGATATCTGGGAAGGCGAATTTTCCACAAAATGATCCTCCTGCCTCACCTCAAACTGAAGTGGACTTGAATCTTTCCGCTAAGTTGTTCACTGCTCTGCGGCTCCTGCGGACAACTATTGTCAAAGAAGCTGGAGAGGGTGTCATGGCCTACCACATTTTTGGAAATGCGACGCTGCAGCAGATAAGCAAGAGAATACCGAGAACAAAGGAAGAGCTCCTTGAGATCAATGGCATTAGCAAGGCCAAGGTAAGCAAGTATGGAGATCGGTTACTGGAAACCATTGAAAATACCATAAGGGAATATCACAAGTCGGACAAAAGCAACAGCTGGAGCAACGAGAGTAATGATTCTGCTAAAAGGAGACGAGACCAAAACGTAAAAGGGGATGATGATGAGTGCACTAGAAGTAATGGTCGTTCAAAGAAAAGGACGGTAAAGAGAAAGAATACAAATGCTGTGGTTTATGATTCTGCGGAAGAAGATTATTTTAAAGATTGCCTAGATGAAGATCTAGATTTTGACAATATAGAAAATACTGCATTGGATATAAATCGTAGGAATTCTGAAGGAAGAGTCCTTCCTCAATGGACATCCTGA 3561 0.4089 MRQGQTNSASDGLPKVNWLDHASAHENFSCQNSFLTSNFLFSLPTQKPCSEEALRGRFVLYQNQNIQRLQRAHIEKAWCALSSLQNSCRNYAKPGKTAQISPPILADKRTTTWQRSSENDRCSQFYNFNVSSENNVKSNQCFPSSNPTAEGGDSLRCLDEATTPTVSNHCSRVLDGSVNNRPKYTAEVNGSTNCMAAKIDEDDDDILGNIDVDQIVENYQSTCTPQPSIAKFPPITPTVDAKSFARQGEHGLPLELCSDCIHGYKVALCPEAANHLQEWKDNLIAISNELLDNVDSLNSSQIAKLRQDRSQLNKQIQQLERYIHSCKLDVERQNSHFSASTAPPTSFQFERPNQTELRSGSMRYDNQAYMSNEPCGASFQSFSFSAVDKYGMSSGPMERETFIPKIIDVNYIEGSGDKRWSDQNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATYLSSNMDWSEQQEILREINSDYCKYKFLYVTPEKVAKSDVLLRQLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVPKTRKCLEDIDKFIRENHYDECGIIYCLSRIDCEKVAEKLQECGHKTAFYHGSMDPAQRTFVQKQWSKDEINIMCATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCILYYSYSDYIRVKHMITQGAIEQSPMTSGYNRSNLTNSRMLETNTGNLLRMVSYCENDGDCRRLLQLAHFGERFDPANCKKTCDNCLKIKSFIEKDVTEIAKQLVELVKITGQNFSSSHILEVYRGSLNQFVKKHRHETVRLHGAGKHLAKGEASRVLHHLVIQDFLAEDVKKSDIYGSISSILKVNESKARNLFGGQKIILRVPSSEKASKLGTPGITPAKGSLISGKANFPQNDPPASPQTEVDLNLSAKLFTALRLLRTTIVKEAGEGVMAYHIFGNATLQQISKRIPRTKEELLEINGISKAKVSKYGDRLLETIENTIREYHKSDKSNSWSNESNDSAKRRRDQNVKGDDDECTRSNGRSKKRTVKRKNTNAVVYDSAEEDYFKDCLDEDLDFDNIENTALDINRRNSEGRVLPQWTS 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4193g00052 1186 ProSiteProfiles HRDC domain profile. 1010 1092 IPR002121 GO:0003676
Pral4193g00052 1186 Gene3D - 635 852 IPR027417 -
Pral4193g00052 1186 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 652 804 IPR001650 -
Pral4193g00052 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 900 IPR027417 -
Pral4193g00052 1186 CDD DEXHc_RecQ 432 634 - -
Pral4193g00052 1186 MobiDBLite consensus disorder prediction 1090 1127 - -
Pral4193g00052 1186 NCBIfam RecQ family ATP-dependent DNA helicase 436 910 IPR004589 GO:0004386|GO:0006310
Pral4193g00052 1186 FunFam ATP-dependent DNA helicase RecQ 417 634 - -
Pral4193g00052 1186 FunFam Bloom syndrome, RecQ helicase 635 854 - -
Pral4193g00052 1186 PANTHER DNA HELICASE RECQ FAMILY MEMBER 416 1100 - -
Pral4193g00052 1186 Gene3D - 857 966 IPR036388 -
Pral4193g00052 1186 Gene3D HRDC domain 1006 1094 IPR044876 -
Pral4193g00052 1186 Pfam HRDC domain 1014 1082 IPR002121 GO:0003676
Pral4193g00052 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 776 IPR027417 -
Pral4193g00052 1186 SMART RQC_2 859 969 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pral4193g00052 1186 SMART ultradead3 440 643 IPR014001 -
Pral4193g00052 1186 Pfam RQC domain 856 972 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pral4193g00052 1186 SMART hrdc7 1010 1092 IPR002121 GO:0003676
Pral4193g00052 1186 Coils Coil 302 322 - -
Pral4193g00052 1186 SMART helicmild6 677 758 IPR001650 -
Pral4193g00052 1186 Pfam RecQ zinc-binding 769 850 IPR032284 -
Pral4193g00052 1186 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 566 575 IPR002464 -
Pral4193g00052 1186 Pfam DEAD/DEAH box helicase 446 614 IPR011545 GO:0003676|GO:0005524
Pral4193g00052 1186 Pfam Helicase conserved C-terminal domain 651 757 IPR001650 -
Pral4193g00052 1186 SUPERFAMILY HRDC-like 1013 1085 IPR010997 GO:0000166|GO:0044237
Pral4193g00052 1186 CDD SF2_C_RecQ 635 767 - -
Pral4193g00052 1186 MobiDBLite consensus disorder prediction 1090 1136 - -
Pral4193g00052 1186 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 452 627 IPR014001 -
Pral4193g00052 1186 Gene3D - 409 634 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4193g00052 Pral-Chr4193 442441 451176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4193g00052 666 789 Eukaryotic Initiation Factors Gene Family AT3G19760 25.197 3.04e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4193g00052 K10901 - qsa:O6P43_031507 1685.23