Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4193g00038 ATGGCGAATCTGACAACCAGCTCACAAATTTGCATCAGAATCGTCATAGCTTTTCTCCAGTTCCTTTCAACTGTTCAAGCTGGTAACAAAGAAGAGAAAGAGCGAATTAAAAGTGTGGCCAAAATTCTGAAAGAGATTTTCAAGATTAGCCAAGAAATGGTGGAAGATGATCAGAAACTTAGGAGGCCTGGTGGGATTCTCGTAACTTTGTTTAGCACGCCTCAAGATGATAATACTGAAGAACTTGAGGAGTCTGAGAATGAACCTTGTAGCTCCACTGCACCAACTACTAAACGAACCTCTTCTTCAAAAGGAGGCGTAATGGTGGCGGGTAGGAACATGGCAAACTTACAGAAAGATTTCAAACAAGCAGTATTAAAGAATGGAGGTCTCGAATATCTGGTTGGTCACAACAACCCCAAAAAGAGAATCCATGGCATTATTGGGAAAATTTTCAACGAAGCTCTCGGGGTGATTCGACAAGAAAAACCTTTCAGATTTAACATGAAGGACGTGGCTGAGACGCTCAAAACACTGGGGAACAAGGCCATGGAAACCAATTGTTACACCAAAGCTGCTGAATTTTACAGTTGTGCTATTGCAATTAACGTGGACAATGCTGTCTACTATTGCAATAGAGGGGCGGCATTGATTAAAATGGGGAGGTTTCATGAAGCCGTTCGTGACTGCTGTAAAGCAATTATCCTGAACCCTACCTACATAAAAGCTTACTATCGCTTAGGTTTAGCTTACAGTGAACAAGGAAAATTCTTTGATGCTATATGCGATGGTTTCTTAAGAGTTTTGCAGCTAGAGGCCATGAATAAAGCTGCCTTGGCCCAAATTGAGCTAGCAGAAGGCAGACTGAGTGAACAACTTTCTTGGTTGGACGATAAGCTTGAAGATCTGAGGAAAAGTGGTATGATTAGCCGATGCCGGAAAGTAGGAATCAAGGAAGGGACAACAATAGTGTATAAAGGGAAAGCAGAAGATGGTGATTCTGAGAAATTTGTGTTGCTTGAAGACGAGGTCGATACTTCCAACATTAACATTGAAGAAGAGACCATGAGTATTGCAGAATTTATCGACCTCTTCTCTAATTCCAACATGGCTCCTTAA 1119 0.4155 MANLTTSSQICIRIVIAFLQFLSTVQAGNKEEKERIKSVAKILKEIFKISQEMVEDDQKLRRPGGILVTLFSTPQDDNTEELEESENEPCSSTAPTTKRTSSSKGGVMVAGRNMANLQKDFKQAVLKNGGLEYLVGHNNPKKRIHGIIGKIFNEALGVIRQEKPFRFNMKDVAETLKTLGNKAMETNCYTKAAEFYSCAIAINVDNAVYYCNRGAALIKMGRFHEAVRDCCKAIILNPTYIKAYYRLGLAYSEQGKFFDAICDGFLRVLQLEAMNKAALAQIELAEGRLSEQLSWLDDKLEDLRKSGMISRCRKVGIKEGTTIVYKGKAEDGDSEKFVLLEDEVDTSNINIEEETMSIAEFIDLFSNSNMAP 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4193g00038 372 Coils Coil 268 288 - -
Pral4193g00038 372 MobiDBLite consensus disorder prediction 76 105 - -
Pral4193g00038 372 SUPERFAMILY TPR-like 171 282 IPR011990 GO:0005515
Pral4193g00038 372 MobiDBLite consensus disorder prediction 88 105 - -
Pral4193g00038 372 SMART tpr_5 241 275 IPR019734 GO:0005515
Pral4193g00038 372 SMART tpr_5 173 206 IPR019734 GO:0005515
Pral4193g00038 372 SMART tpr_5 207 240 IPR019734 GO:0005515
Pral4193g00038 372 ProSiteProfiles TPR repeat profile. 207 240 IPR019734 GO:0005515
Pral4193g00038 372 PANTHER LD24721P 1 292 IPR047150 -
Pral4193g00038 372 Pfam Tetratricopeptide repeat 209 239 IPR019734 GO:0005515
Pral4193g00038 372 Gene3D Tetratricopeptide repeat domain 154 301 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4193g00038 Pral-Chr4193 310909 314253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4193g00038 172 301 U-box Gene Family AT3G07370 27.778 5.07e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4193g00038 K16365 - pcin:129285647 294.664