Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4188g00010 ATGGGCTCCAGGAAGGGTGACAATCCTCACTCCGGCGATGGTGCCAGTCCTGGCAAAATCTTCATTGGAGGGCTAGCTAGAGATACAACACTTGAACAATTCGTCAAGTATTTTGAGAAGTATGGGGAGATAACAGACTCGGTGATAATGAAAGATCGGCATACGGGTCGACCCAGGGGTTTCGGTTTCATTACTTACGCAGATCCTTCTGTCGTTGACCACGTTATTCAGGAGAACCATGTGATCAATGGGAAGCAGGTGGAGATCAAAAGGACGATTCCAAAGGGCTCATCTCAGGCTAATGATTTTAAAACTAAGAAGATATTTGTTGGTGGTATTCCAACCTCAGTAAGCGAAGATGAATTGAAGAACTTCTTTTCAAAGTATGGGAAGGTTGTGGAGCATGAGATCATTCGTGATCACACTACTAAACGCTCTCGAGGATTTGGATTTGTAGTGTTTGACAGTGAAAAAGTTGTTGATAATTTGCTGTCAAATGGAAACATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCCAAGAAAGCCTCAAACCCAACATCTTTTCCTCCATTTGGTAGTGATAGGGCACGCCCATACAGTGATGGTTATGGTGGATTTGGCGAATCCTATAGCAGTTTTGGCAGTGGCAGTTTTGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTTGGCAGCAGGCTTGGTGATTACAGTGGGTACGGTGGTGATGAATTTGGTAGTAGTTTTGGAGGCTATGGTGGTGGTGGTGGTGGTTTTGCTGGCTACCGAGGTGATTCATCATTTGGCTATTCTAGCCGCTATGGTTCCTATATGGGGAGCCTTGGTGGTGGATATGGTGGAAGTGGGCTAGGTGCATATGGGCGAGGCGCTGGGGGCTTTGCAAGCTATGGTGGACCTGGTTCTGGTGGGGGTTATGACTCTGGCCCTGGTGCTGGCTATGGTGGGCCGGGGGCACTATATGGTAGTAGAGGAGCTTATGGAGGCAGTAGTCGTTACCACCCTTATGCAAGATAG 1047 0.4728 MGSRKGDNPHSGDGASPGKIFIGGLARDTTLEQFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDHVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFVVFDSEKVVDNLLSNGNMIDMAGTQVEIKKAEPKKASNPTSFPPFGSDRARPYSDGYGGFGESYSSFGSGSFGPASYRSLGGFGSRLGDYSGYGGDEFGSSFGGYGGGGGGFAGYRGDSSFGYSSRYGSYMGSLGGGYGGSGLGAYGRGAGGFASYGGPGSGGGYDSGPGAGYGGPGALYGSRGAYGGSSRYHPYAR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4188g00010 348 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 348 - -
Pral4188g00010 348 Gene3D - 97 221 IPR012677 -
Pral4188g00010 348 SUPERFAMILY RNA-binding domain, RBD 10 98 IPR035979 GO:0003676
Pral4188g00010 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Pral4188g00010 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 223 - -
Pral4188g00010 348 SUPERFAMILY RNA-binding domain, RBD 102 213 IPR035979 GO:0003676
Pral4188g00010 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Pral4188g00010 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 168 IPR000504 GO:0003723
Pral4188g00010 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Pral4188g00010 348 SMART rrm1_1 19 90 IPR000504 GO:0003723
Pral4188g00010 348 SMART rrm1_1 107 180 IPR000504 GO:0003723
Pral4188g00010 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Pral4188g00010 348 Gene3D - 18 96 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4188g00010 Pral-Chr4188 154826 158877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4188g00010 4 170 Eukaryotic Initiation Factors Gene Family AT1G71770 26.203 2.57e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4188g00010 K12741 - gmx:100801373 407.527