Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4183g00001 ATGCAACCCAAAAGCAATTCTTTAGTACTGGTGTTCTTCCTTCTGTTGTTAGAAACATCTCTTCTCAACAACGTAGAATCCAAGTGTCTCCAAGGTTGTCCTTTAGCTTTAGCATCCTACTACGCTTATAAGAACAATCTAGGTAACATAACCAAGTTTCTGAGATCAGATCTTGTGTCAGATTTTGGAGTTGTTTCCAGCTACAACGAAGGAAAAGTATCCAACAATGGAATGTACGTTCAATCCTTAACGAGAATCAACATTCCTTTCCCCTGTGATTGTATCAATAATGGGGATTTTCTGGGTCATGTGTTCGAGTACACAATAGCAGAAGGAGATACTTACGATTCCATTGCGACACAAACATATTCTTCGTTGACCACAGTGGATTTACTGAGAAGATTCAATAGTTATAAGGATCCAAATCAGCTTCCTCTCAATGGGAAGCTTAATGTCACAGTGAATTGTTCTTGTGGGGACAGACAGATTTCTAAGGATTATGGATTGTTTCTTACTTATCCACTTAGATTTGGAGATAGCTTGGAATCCATTGTGGACCAGACTGGTATTGATGCAACGTTGCTTCAGAAATACAATCTTCGTGTGAATTTCAGCCAGGAGAGTGGAGTGGTTTTTATTCCAGGAAGAGATCAGAATGGAAATTACGTGCCCCTGGACCCTAGGTCAAGAGGTCTAAGTGAGGTTGCCATTGCTGGAATTTGTGTTGGAGCAACATTTGTGTTTCTATTATTATCAGCTTATGTATTTGTTAAACACTTCCGAAGAAAGACCGCCAAAGTTGCATTGATCACAGAAAATTCTACAGATCTTTCATCAAATCAAGACGGTATGATCATTACATCTACCAATTACGAAACTTCAGGATCTAGTGGATCTGCTAGTGCCACTGGTCTTAGAGGCATCATGGTTGGGAAGTCCATGGAGTTCTCATATCAAGAAATAGCCAAAGCTACCAATAACTTCAGCTCTGATAACAAGATTGGTCAAGGAGGTTTCGGAGCAGTATATTATGCCGAGCTGAGAGGCGAGAAAACTGCAATCAAGAAGATGGATATAGAAGCATCACAAGAGTTTCTTGCTGAGTTGAAGGTTTTAACGCATGTTCATCATTTGAATCTGGTGCGGTTGATCGGATATTGCGTGGAGGGATCGCTTTTCCTTGTTTATGAATACATTAACAATGGAAACTTAAGCCAGCATTTACGTTCCTCAGAGTTAGATGCATTGCCATGGTGTACAAGGGTGCAAATAGCTCTGGATTCAGCAAGAGGTCTTGAATATATTCATGAACACACAGTGCCTGTATATATTCATCGTGACGTTAAGTCTTTGAACATATTAATTGACGAAAGCTTCCATGCTAAGGTGGCAGATTTTGGGTTAAGCAAACTCATTGAAGTTGGAAATGCCTCGCTTAACACACGTCTTGTGGGAACATTTGGATATATGTCTCCAGAGTATGCTCAATATGGAATAACATCTCCAAAAATAGATGTGTATGCTTTTGGAGTGGTACTTTATGAACTCATTTCTGCTAAGAATGCTGTCCTCAAGACTGGTGAATTTGTTGCTGAATCAAAAGGTCTTGTTGCTCTGTTTGAGAAATCTCTTGGTAGGCCTGATGCTGTTGAAGACCTTCGCAAGCTTGTGGATCCTAGACTTGGCCAAAACTACCCCATTGATTCAGTTTTTAAGATGGCACAACTTGCTAGAGCTTGCACACAAGATGATCCACAGCTACGTCCCACAATGAGATCAATTGTGGTGGCTCTCATGACACTTTCATCTAACGCTGATGATGAGGATTGTGACGTTGGCTCTGCCTTCTCTGATAATCACACCATCATAAATCTCCTCTCTGGAAGATAA 1890 0.4048 MQPKSNSLVLVFFLLLLETSLLNNVESKCLQGCPLALASYYAYKNNLGNITKFLRSDLVSDFGVVSSYNEGKVSNNGMYVQSLTRINIPFPCDCINNGDFLGHVFEYTIAEGDTYDSIATQTYSSLTTVDLLRRFNSYKDPNQLPLNGKLNVTVNCSCGDRQISKDYGLFLTYPLRFGDSLESIVDQTGIDATLLQKYNLRVNFSQESGVVFIPGRDQNGNYVPLDPRSRGLSEVAIAGICVGATFVFLLLSAYVFVKHFRRKTAKVALITENSTDLSSNQDGMIITSTNYETSGSSGSASATGLRGIMVGKSMEFSYQEIAKATNNFSSDNKIGQGGFGAVYYAELRGEKTAIKKMDIEASQEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYINNGNLSQHLRSSELDALPWCTRVQIALDSARGLEYIHEHTVPVYIHRDVKSLNILIDESFHAKVADFGLSKLIEVGNASLNTRLVGTFGYMSPEYAQYGITSPKIDVYAFGVVLYELISAKNAVLKTGEFVAESKGLVALFEKSLGRPDAVEDLRKLVDPRLGQNYPIDSVFKMAQLARACTQDDPQLRPTMRSIVVALMTLSSNADDEDCDVGSAFSDNHTIINLLSGR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4183g00001 629 Pfam LysM domain 107 150 IPR018392 -
Pral4183g00001 629 Gene3D Transferase(Phosphotransferase) domain 1 399 620 - -
Pral4183g00001 629 SMART serkin_6 328 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4183g00001 629 CDD LysM 107 152 IPR018392 -
Pral4183g00001 629 Pfam Protein tyrosine and serine/threonine kinase 331 597 IPR001245 GO:0004672|GO:0006468
Pral4183g00001 629 SUPERFAMILY Protein kinase-like (PK-like) 309 598 IPR011009 -
Pral4183g00001 629 FunFam LysM receptor kinase 2 307 398 - -
Pral4183g00001 629 FunFam PTI1-like tyrosine-protein kinase 3 399 612 - -
Pral4183g00001 629 ProSiteProfiles Protein kinase domain profile. 328 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4183g00001 629 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Pral4183g00001 629 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 14 614 IPR044812 GO:0019199|GO:0045087
Pral4183g00001 629 ProSiteProfiles LysM domain profile. 105 152 IPR018392 -
Pral4183g00001 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Pral4183g00001 629 Gene3D Phosphorylase Kinase; domain 1 302 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4183g00001 Pral-Chr4183 16654 22699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4183g00001 15 629 Receptor kinase-like Gene Family AT3G21630 53.462 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pral4183g00001 PK_Tyr_Ser-Thr 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4183g00001 K13429 - gmx:100776847 775.393