Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4182g00002 ATGCAACCCAAAAGCAATTCTTTAGTACTGGTGTTCTTCCTTCTGTTGTTAGAAACATCTCTTCTCAACAACGTAGAATCCAAGTGTCTCCAAGGTTGTCCTTTAGCTTTAGCATCCTACTACGCTTATAAGAACAATCTAGGTAACATAACCAAGTTTCTGAGATCAGATCTTGTGTCAGATTTTGGAGTTGTTTCCAGCTACAACGAAGGAAAAGTATCCAACAATGGAATGTACGTTCAATCCTTAACGAGAATCAACATTCCTTTCCCCTGTGATTGTATCAATAATGGGGATTTTCTGGGTCATGTGTTCGAGTACACAATAGCAGAAGGAGATACTTACGATTCCATTGCGACACAAACATATTCTTCGTTGACCACAGTGGATTTACTGAGAAGATTCAATAGTTATAAGGATCCAAATCAGCTTCCTCTCAATGGGAAGCTTAATGTCACAGTGAATTGTTCTTGTGGGGACAGACAGATTTCTAAGGATTATGGATTGTTTCTTACTTATCCACTTAGATTTGGAGATAGCTTGGAATCCATTGTGGACCAGACTGGTATTGATGCAACGTTGCTTCAGAAATACAATCTTCGTGTGAATTTCAGCCAGGAGAGTGGAGTGGTTTTTATTCCAGGAAGAGATCAGAATGGAAATTACGTGCCCCTGGACCCTAGGTCAAGAGGTCTAAGTGAGGTTGCCATTGCTGGAATTTGTGTTGGAGCAACATTTGTGTTTCTATTATTATCAGCTTATGTATTTGTTAAACACTTCCGAAGAAAGACCGCCAAAGTTGCATTGATCACAGAAAATTCTACAGATCTTTCATCAAATCAAGACGGTATGATCATTACATCTACCAATTACGAAACTTCAGGATCTAGTGGATCTGCTAGTGCCACTGGTCTTAGAGGCATCATGGTTGGGAAGTCCATGGAGTTCTCATATCAAGAAATAGCCAAAGCTACCAATAACTTCAGCTCTGATAACAAGATTGGTCAAGGAGGTTTCGGAGCAGTATATTATGCCGAGCTGAGAGGCGAGAAAACTGCAATCAAGAAGATGGATATAGAAGCATCACAAGAGTTTCTTGCTGAGTTGAAGGTTTTAACGCATGTTCATCATTTGAATCTGGTGCGGTTGATCGGATATTGCGTGGAGGGATCGCTTTTCCTTGTTTATGAATACATTAACAATGGAAACTTAAGCCAGCATTTACGTTCCTCAGAGTTAGATGCATTGCCATGGTGTACAAGGGTGCAAATAGCTCTGGATTCAGCAAGAGGTCTTGAATATATTCATGAACACACAGTGCCTGTATATATTCATCGTGACGTTAAGTCTTTGAACATATTAATTGACGAAAGCTTCCATGCTAAGGTGGCAGATTTTGGGTTAAGCAAACTCATTGAAGTTGGAAATGCCTCGCTTAACACACGTCTTGTGGGAACATTTGGATATATGTCTCCAGAGTAA 1482 0.4001 MQPKSNSLVLVFFLLLLETSLLNNVESKCLQGCPLALASYYAYKNNLGNITKFLRSDLVSDFGVVSSYNEGKVSNNGMYVQSLTRINIPFPCDCINNGDFLGHVFEYTIAEGDTYDSIATQTYSSLTTVDLLRRFNSYKDPNQLPLNGKLNVTVNCSCGDRQISKDYGLFLTYPLRFGDSLESIVDQTGIDATLLQKYNLRVNFSQESGVVFIPGRDQNGNYVPLDPRSRGLSEVAIAGICVGATFVFLLLSAYVFVKHFRRKTAKVALITENSTDLSSNQDGMIITSTNYETSGSSGSASATGLRGIMVGKSMEFSYQEIAKATNNFSSDNKIGQGGFGAVYYAELRGEKTAIKKMDIEASQEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYINNGNLSQHLRSSELDALPWCTRVQIALDSARGLEYIHEHTVPVYIHRDVKSLNILIDESFHAKVADFGLSKLIEVGNASLNTRLVGTFGYMSPE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4182g00002 493 Gene3D LysM domain 105 163 IPR036779 -
Pral4182g00002 493 ProSiteProfiles Protein kinase domain profile. 328 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4182g00002 493 SMART serkin_6 328 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4182g00002 493 CDD LysM 107 152 IPR018392 -
Pral4182g00002 493 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Pral4182g00002 493 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 14 493 IPR044812 GO:0019199|GO:0045087
Pral4182g00002 493 Gene3D Phosphorylase Kinase; domain 1 302 398 - -
Pral4182g00002 493 FunFam LysM receptor kinase 2 307 398 - -
Pral4182g00002 493 Gene3D Transferase(Phosphotransferase) domain 1 399 493 - -
Pral4182g00002 493 ProSiteProfiles LysM domain profile. 105 152 IPR018392 -
Pral4182g00002 493 Pfam LysM domain 107 150 IPR018392 -
Pral4182g00002 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Pral4182g00002 493 Pfam Protein tyrosine and serine/threonine kinase 331 493 IPR001245 GO:0004672|GO:0006468
Pral4182g00002 493 SUPERFAMILY Protein kinase-like (PK-like) 309 493 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4182g00002 Pral-Chr4182 19919 23828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4182g00002 15 493 Receptor kinase-like Gene Family AT3G21630 52.577 7.68e-168 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pral4182g00002 PK_Tyr_Ser-Thr 1.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4182g00002 - K13429 gmx:100776847 593.193