Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4179g00002 ATGGCTGCCAAGAAGTGCTCTTTGCTGAAGGAAGTCAATGACTCAACTGACAGATGGAGAATTACAGTTCGTGTGATCAGGAGGTGGAATGTCTACAAGAAGGAGTCTCCTACTAAGGTTTTTTGTGTGTCCATGCTACTGATAGACGAAGAGGGGACAAGAATCCAAGCTTCTATCATGAACAAAAACCTATTTGATTGTTTTAGTGCCATGGCAGTGGAAGGGATAACTTATTTTATGGCTAATTTCGTCGTCTCTCCAAATAATAAGGAGTACAGGGCAACAAACCATGCTTTCAAACTGACACTAGGTACTTACACATATGTGAAGGAAGTACTTGCCCAAATACCTGAATACTCTTATCATTTCTTCCCTATTCGTGACATAATTAAGATGAAGGAGAGCAACCATGTTGACTATCTTATTGATGTTATTGGATTCGTTGCATCAATTGGGCATCTAGAGGAGTACAAGTCTAACAATGAGATCAAGAACAAATTGAGATTGTTGCTGTGCAATACTGTGGGTTGCGTTCTTTATGATGACTGTGCAACCAATGTCTGCATGATGGATATTAGCACCATGCAATCTCCTGTTGTGATGATTATGCAGCTTGGAAGGATTGGATTTGATGATGATGGTATGGCTGAGATTTGCAGCTCATACCATGCCACCCAGATTTCATGCAATCCAAAGTTTCCAGAAGTCAAGCATTTTATCGATAGTGCTACCACATTACCCTCTCCTACTATCAGCACAATCTCTCATACTGCTACTACACAATCAAATGATCAGTCTGCAACTAGCCTGCTCCGTAACCATCCTTTGATTTTTGTTGCAGACATATGCAATCAGCCAGCTGATTCGTTCTTCCTCATAAAGTGCTTAGTAGTCAAAGTTGACACGAGCATGGCTGGTGCTATGAAGGTTGCTCCAGGTGTGGCAGCAAACCAAGGAGTGTTAAGGGTCCACTACACGGTTGAGGATTCATCTGGCAAGGCAACTGTAGTCTTCTTTGACAAACTTGCTTCTAATTTCTTCCAAAAGACTGCACTTGAGATGAATCACACTCTTATTAAGGAGGAACGTGAATATGATTTTCCTGATGAGCTAGACCTAATGGTTGGAAAGACGGTGCTGTTGAAACTTAAGCTGAACAAGTATAACGTTGACTTCCCAAATTCTGGCATATCTGTTGCATCATTCACACAGTGCACTGATTTGATGGATGAATTCAATGAGGTTAGCGATCAGAACACCCATGCTGAAGAAGAGGCCACTGACACAGTCGTTCCTGAATCTGTCACTGCTGACCCACTAGTATTGAATGAAGTTACTAATGTTGCCATCGACGAGAATGATGAAGACAGCCCCGGCATTGAGGAGATACCTCTGTCTAGGATAGCTGGCCCCTCAACTTACAGGCCAAAGAGGAAGGTAGCTGGGAAGAGGATCATTGGAGTTAAGGAGAAATGGGTTCGTTCACCCAATGCCTCACCTATCAAGACATCGTCCAAGCCTTTAAAGAGCATCAAGCAAGAGAAGAACTGA 1551 0.4255 MAAKKCSLLKEVNDSTDRWRITVRVIRRWNVYKKESPTKVFCVSMLLIDEEGTRIQASIMNKNLFDCFSAMAVEGITYFMANFVVSPNNKEYRATNHAFKLTLGTYTYVKEVLAQIPEYSYHFFPIRDIIKMKESNHVDYLIDVIGFVASIGHLEEYKSNNEIKNKLRLLLCNTVGCVLYDDCATNVCMMDISTMQSPVVMIMQLGRIGFDDDGMAEICSSYHATQISCNPKFPEVKHFIDSATTLPSPTISTISHTATTQSNDQSATSLLRNHPLIFVADICNQPADSFFLIKCLVVKVDTSMAGAMKVAPGVAANQGVLRVHYTVEDSSGKATVVFFDKLASNFFQKTALEMNHTLIKEEREYDFPDELDLMVGKTVLLKLKLNKYNVDFPNSGISVASFTQCTDLMDEFNEVSDQNTHAEEEATDTVVPESVTADPLVLNEVTNVAIDENDEDSPGIEEIPLSRIAGPSTYRPKRKVAGKRIIGVKEKWVRSPNASPIKTSSKPLKSIKQEKN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4179g00002 516 Gene3D - 114 247 IPR012340 -
Pral4179g00002 516 MobiDBLite consensus disorder prediction 496 516 - -
Pral4179g00002 516 Gene3D - 283 415 IPR012340 -
Pral4179g00002 516 SUPERFAMILY Nucleic acid-binding proteins 121 242 IPR012340 -
Pral4179g00002 516 Coils Coil 405 425 - -
Pral4179g00002 516 SUPERFAMILY Nucleic acid-binding proteins 9 112 IPR012340 -
Pral4179g00002 516 Gene3D - 4 111 IPR012340 -
Pral4179g00002 516 CDD RPA1_DBD_A_like 20 101 - -
Pral4179g00002 516 Pfam Domain of unknown function DUF223 45 131 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4179g00002 Pral-Chr4179 5696 8311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4179g00002 9 239 Core DNA Replication Machinery Family AT5G61000 28.514 1.49e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4179g00002 - - pcin:129290097 362.459