LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4172g00023	ATGGCCAGTAATGGTGCAAGGGAGCCCTTGGTGCGACAAACGGAATTACCAGATCCAGCAGCTCTGAAAACAAATGGCCAGGTTGGCAGGAGAAGGTATCTCCACTCTAGAAGTGCTCCTCTTGCTAATCTTGATCCACTGGAGAAAACTGACATTGGCTCAATTCAGCGTTCTGAGTCCATATTTGGGAGGTTACATCCAAGTTTTCTAAAGGTGGCTATATATCTTGTAGGGTATTTAAGTATTGGACTTGTGATCTTCTATCTTGTCAGGCACCAGATTGCAGGGAAGAAAACGGCGGCGTTCCGTGATGCTCTATACTTCACAATTGTCACGATGACCACAGTTGGATATGGAGACCTTGTGCCAAATAGTGACCTTACAACACTACTTGCCTGTGCTTTTGTATTCACAGGAATGGCACTAGTTGGTTTAATCTTGAGCAAGGTAGCAGACTACTTGGTTGAAAAGCAGGAAATTTTGCTAGTCAAAGCTCTGCATGGGAGCCATAAAGTTGGTCCAACTGATATCCTAAAGGAGGTTGAGGTCAACAAGACGAGATATAAATTTTTTGTGGTATTTTCCCTGCTTTTGTTGCTCATTGTTGCGGGGACAATTTTCTTAGTTGCTGTTGAGAAGTTGGATATTATCAATGCCTTATATTGTGTTTGTTCTACAATAACAACCCTGGGTTATGGTGATAAAAGCTTTTCAAGTGAAGGAGGAAGAGTCTTTACTGTGTTTTCGATATTGATGGGTACTATTTGTTTAGGTCAGCTTTTCCTTTGCATTGCTGAGCTGAAAACTGAAAAAAGACAAAAGGAAATCACTAAGATGGTTCTTACACGGAGGACAACCAATGCAGACTTGGAGGCAGCAGATCTTGATGATGATGGAAATGTTGGGGTTGCTGAGTTCATTATCTATAAGCTTAAGGAGATGGGGAAGATATCTCAAGAAGATATCTCACTCGTAATGCAAGAGTTTGAGGAGCTTGATGTTGATCAATCTGGTACTCTTTCACCTTCTGATATAACTCTTGCTCAACCACCTCGTCCACCTTAG	1065	0.4188	MASNGAREPLVRQTELPDPAALKTNGQVGRRRYLHSRSAPLANLDPLEKTDIGSIQRSESIFGRLHPSFLKVAIYLVGYLSIGLVIFYLVRHQIAGKKTAAFRDALYFTIVTMTTVGYGDLVPNSDLTTLLACAFVFTGMALVGLILSKVADYLVEKQEILLVKALHGSHKVGPTDILKEVEVNKTRYKFFVVFSLLLLLIVAGTIFLVAVEKLDIINALYCVCSTITTLGYGDKSFSSEGGRVFTVFSILMGTICLGQLFLCIAELKTEKRQKEITKMVLTRRTTNADLEAADLDDDGNVGVAEFIIYKLKEMGKISQEDISLVMQEFEELDVDQSGTLSPSDITLAQPPRPP	354

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4172g00023	354	Coils	Coil	264	284	-	-
	Pral4172g00023	354	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	100	324	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Pral4172g00023	354	SUPERFAMILY	Voltage-gated potassium channels	183	283	-	-
	Pral4172g00023	354	Gene3D	-	175	294	-	-
	Pral4172g00023	354	SUPERFAMILY	Voltage-gated potassium channels	64	160	-	-
	Pral4172g00023	354	MobiDBLite	consensus disorder prediction	333	354	-	-
	Pral4172g00023	354	Gene3D	-	66	164	-	-
	Pral4172g00023	354	SUPERFAMILY	EF-hand	254	346	IPR011992	-
	Pral4172g00023	354	PRINTS	Two pore domain K+ channel signature	228	237	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Pral4172g00023	354	PRINTS	Two pore domain K+ channel signature	111	139	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Pral4172g00023	354	ProSitePatterns	EF-hand calcium-binding domain.	333	345	IPR018247	-
	Pral4172g00023	354	Pfam	Ion channel	196	265	IPR013099	-
	Pral4172g00023	354	Pfam	Ion channel	74	155	IPR013099	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4172g00023	Pral-Chr4172	208698	210637	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4172g00023	61	349	Ion Channels	AT5G55630	64.014	2.31e-132	380

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4172g00023	K05389		-	gmx:100777388	446.817