Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4172g00007 ATGGGAAGCTTCATGGAGATGCAGATGGAGGAGGAGTTCATCTTCCGGAGCCCTCATTCCGGGGTAGTCACGGTGCCGGACAATGTGACGCTGCCGGAGTTTGTGCTTCAGAACTCAGAGTTGTACGCCGACAAGGTTGCGTTCGTGGAGGCTGGGAGTGGGAAGGCGATCACACATGGCCAGGTGAAGAGGGACACAGAGAGGTTTGCCAAGGCGTTGAGATCTTTGGGTCTGAGGAAAGGGCATGTGGTGATTGCAGTGCTTCCCAACGTTGCTGAGTATGCGATTGTTGCTTTGGGGATTATGGCGGCCGGCGGGGTGTTCTCCGGCGCGAATCCGGCAGCTCATGCGTCGGAAATTAAGAAGCAGGCTCAATCTGCTGATGCGAAGCTCATTGTCGCAAATGGACTCAACTATGAAAAGGTCAAAGCTGTAGGACTACCGGTGATAGTCCTAGACGACGAACCCATCGAGGACGCCATGAACTGGAAGAAGCTTCTAGACGCGGCGGACCGAGCCGGCCAAACCGTTCCGAAAGAACCGATCTCACAGATCGACCTCTGTGCAATGCCTTTCTCCTCAGGAACCACCGGACTCTCAAAGGGCGTCATGCTAACTCACAGAAACCTCGTCGCCAACCTCTGTTCCACTCTCTTCGGCGTCGAACCGGAAATGGTGGGTCAGGTCACCTCCCTTGGGTTGCTCCCTTTCTTCCATATCTACGGCATCGCCGGAATCTGCTGCGCCACCCTGAGAAACAAAGGCACGGTGGTGGTTATGGGACGCTTCGAGCTGAGGACTTTTTTGAATGCTCTGATCGCTCATGAGGTCAACTTCGCTCCGATCGTCCCTCCGATCATTCTGAACTTGGTTAAGAACCCGGTCGTCGATGAGTTCGATCTCTCCAAGCTCAAGCTTCAGGCAGTCCTCACGGCCGCCGCTCCTCTTGCTCCGGAAGTCCTCACCGCATTTGAGAATAAATTCCCTGGTGTTCTGGTCCAACAAGCATATGGACTAACAGAACATAGCTGCATCACACTAACTCATGCACACAAAGGATTAGCGAATTCAAAGAGGAACTCAGTGGGTTTCATCCTCCCTAATTTGGAAGTAAAGTTCATTGATCCTGACACAGGCAAGTCCCTTCCGAGGAACACGTCCGGCGAGCTTTGCGTGAGAAGCCAGGCCGTCATGCAAGGTTACTACAAGCAGGTGGAAGAGACTGCACAGACTATTGATAAGAATGGGTGGCTTCACACCGGAGACATAGGCTTCATTGATGATGACGACAATGTGTTCATTGTTGATCGTATCAAGGAGTTGATTAAATACAAAGGTTTCCAAGTTGCTCCAGCGGAGCTAGAGGCCATTCTTCTATCACATTCTTCGGTTGAAGATGCTGCTGTCGTTCCAATAGCAGATGAAGAAGCAGGAGAGATCCCAGGGGCAAGTGTGGTGATGTGCGCAGGTGCAAAAGAGAGTGAAGAGGACATGATCAAGTACGTTGCTTCTAACGTTGCCAGTTACAAGAAAGTGAGAGTTCTTCACTTTGTGGACGCCATCCCTAAATCTCCTTCTGGCAAAATCATGAGGAGGCTCGTCCGAGACAGAATGCTCCAAAACATGACACCTTCTCATTCAAAATCTGCCTAA 1653 0.5148 MGSFMEMQMEEEFIFRSPHSGVVTVPDNVTLPEFVLQNSELYADKVAFVEAGSGKAITHGQVKRDTERFAKALRSLGLRKGHVVIAVLPNVAEYAIVALGIMAAGGVFSGANPAAHASEIKKQAQSADAKLIVANGLNYEKVKAVGLPVIVLDDEPIEDAMNWKKLLDAADRAGQTVPKEPISQIDLCAMPFSSGTTGLSKGVMLTHRNLVANLCSTLFGVEPEMVGQVTSLGLLPFFHIYGIAGICCATLRNKGTVVVMGRFELRTFLNALIAHEVNFAPIVPPIILNLVKNPVVDEFDLSKLKLQAVLTAAAPLAPEVLTAFENKFPGVLVQQAYGLTEHSCITLTHAHKGLANSKRNSVGFILPNLEVKFIDPDTGKSLPRNTSGELCVRSQAVMQGYYKQVEETAQTIDKNGWLHTGDIGFIDDDDNVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPIADEEAGEIPGASVVMCAGAKESEEDMIKYVASNVASYKKVRVLHFVDAIPKSPSGKIMRRLVRDRMLQNMTPSHSKSA 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4172g00007 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 536 - -
Pral4172g00007 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 19 439 - -
Pral4172g00007 550 SUPERFAMILY Acetyl-CoA synthetase-like 24 540 - -
Pral4172g00007 550 Pfam AMP-binding enzyme 39 444 IPR000873 -
Pral4172g00007 550 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Pral4172g00007 550 Gene3D - 13 439 IPR042099 -
Pral4172g00007 550 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Pral4172g00007 550 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Pral4172g00007 550 CDD 4CL 25 532 - -
Pral4172g00007 550 Gene3D - 440 543 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4172g00007 Pral-Chr4172 91625 95631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4172g00007 5 539 Monolignol Biosynthesis Gene Families AT1G62940 72.542 0.0 779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4172g00007 K01904 - gmx:100811418 841.647