Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4170g00035 ATGTCACGTATATCATTGCTGAAAGATTTGAATGATACAACCGATAGGTGGCACATAGTGGCAAGAGTTTTCAGAAAATGGAATGTCTTTCATAAGGCAGCCCCTTCAGATATTTTTTGTGTGTCAATGGTTCTATTGGATGAAGAGGGGGATAAAATACAAGCAAGTGTTTTGAACAAGAGCTTGCATGACAAGTTTCGGCATGGTATTATTGAAGGACAGACTTACTTCTTTGCCAATTTTGAAGTCTCTCCAAATGTTAACCAATATAGAGCAACCACTCATCCTTTCAAGATTACCTTAACTCCAAGAACCCGTGTTGCTGGGAAACTTGCCAGTCTGCCAAGTTATTCTTATTCATTCTTCCCACTTGCTGATATCGTGAAGCTTGATCAGAGCCATGTTATTGATTACTTGATAGATGTTCTGGCATTTGTGAAGTCAATGGGCACACTTCAAGAATATCGTCGCGACAATGAAACCAAGAACAAATTGCGGATGGTCTTAACTGATATAGAGGGAAGTGATGTCGAATGTACATTATTTGATGAAGCTGCCAATGATGCATTTATGTCTCACTTACAAAATACACAAACACCAGCTGTGTTGTTATTGAATATGGCCAGGATTGGATTTTCAGATGATGGAAAACCACAAGTTTGCAACTCTTTTAATGCTACAAGGGTGTTTTTCAATCCACCTATTAAGGAAGTACAACAACTTATTGATAGTGGAAAAGATAATGGCTCACCAGCTCTCTCATTTCTCAGTCAAACCGCGCCTTCTCAATTGAGCCAGCAGTCATGTTCTGGAATGGCACGAAATCAAAACAAGATCACTATCTCACAGATAAAAGATCAACCAATGGGAGAAAATTTTGTTATTAACTGTATCATTCAGAAGTTAGAGACAAGATATGATTGGGTTTATGATGGTTGTTCAAAATGTGGCACAAAGCCCCGATTAGAGAATGAAACTTCCATATGTCCATCATGTCGCAAGACGCCAGATTCAATAGAACCAAAGATGAAAGTCCACTACACTGTCAAGGATCACACAGGAAGTACTTCTGTCATTTTCTGGGATAAACTTGCTGTTGATTTGATTAAAAATACAGCCACTGAATTGATGCAGATGCTAGAGAAGGATCCTGAGGAAGTTGATTTCCCAAAGAACTTGGACAATCCTGTTGGGAAGAATTTGTTGCTCATTATGAAACTCAATGAGTATAACAAACGCCACCCAGGTTCTAGCATTAGTGTTTTGCAATATCAATTATGTGAAGATTTGATGGATCAGTTCACTCAAGCATCAACTGAGGGTTCTCAGGTTGACAATGGAGAAGGTGAGGAACATGTCAAAGCTGATGAAACAGTTCCTCCAACTGCACAGACAGAGTTTGTTTCGGACTGTAATGCTAAAGATGATATGAAACTATCAGATCTGGTCAACCATGCTCCACATCCTCCTGTTAAAGCAAAAAGAAGAGGCAATGTGAAGAACAACGCAGTGAACCATATGGATGAAGCATCTCCAGCTCCTCAAGAGAGACGTCTGAAAGCTATCAAGATAGAGAAATAA 1581 0.3928 MSRISLLKDLNDTTDRWHIVARVFRKWNVFHKAAPSDIFCVSMVLLDEEGDKIQASVLNKSLHDKFRHGIIEGQTYFFANFEVSPNVNQYRATTHPFKITLTPRTRVAGKLASLPSYSYSFFPLADIVKLDQSHVIDYLIDVLAFVKSMGTLQEYRRDNETKNKLRMVLTDIEGSDVECTLFDEAANDAFMSHLQNTQTPAVLLLNMARIGFSDDGKPQVCNSFNATRVFFNPPIKEVQQLIDSGKDNGSPALSFLSQTAPSQLSQQSCSGMARNQNKITISQIKDQPMGENFVINCIIQKLETRYDWVYDGCSKCGTKPRLENETSICPSCRKTPDSIEPKMKVHYTVKDHTGSTSVIFWDKLAVDLIKNTATELMQMLEKDPEEVDFPKNLDNPVGKNLLLIMKLNEYNKRHPGSSISVLQYQLCEDLMDQFTQASTEGSQVDNGEGEEHVKADETVPPTAQTEFVSDCNAKDDMKLSDLVNHAPHPPVKAKRRGNVKNNAVNHMDEASPAPQERRLKAIKIEK 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4170g00035 526 SUPERFAMILY Nucleic acid-binding proteins 5 107 IPR012340 -
Pral4170g00035 526 Gene3D - 113 252 IPR012340 -
Pral4170g00035 526 PANTHER OS03G0429900 PROTEIN 6 414 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral4170g00035 526 CDD RPA1_DBD_A_like 19 107 - -
Pral4170g00035 526 Gene3D - 262 432 IPR012340 -
Pral4170g00035 526 Gene3D - 2 108 IPR012340 -
Pral4170g00035 526 CDD RPA1_DBD_B_like 141 244 - -
Pral4170g00035 526 Pfam Domain of unknown function DUF223 43 124 IPR003871 -
Pral4170g00035 526 MobiDBLite consensus disorder prediction 437 463 - -
Pral4170g00035 526 SUPERFAMILY Nucleic acid-binding proteins 277 410 IPR012340 -
Pral4170g00035 526 MobiDBLite consensus disorder prediction 481 526 - -
Pral4170g00035 526 SUPERFAMILY Nucleic acid-binding proteins 118 246 IPR012340 -
Pral4170g00035 526 MobiDBLite consensus disorder prediction 511 526 - -
Pral4170g00035 526 Pfam Replication factor-A C terminal domain 293 388 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4170g00035 Pral-Chr4170 367399 369791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4170g00035 2 379 Core DNA Replication Machinery Family AT2G06510 23.250 3.52e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4170g00035 - - pcin:129290097 495.352