Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4170g00009 ATGAATTCCGGGATCTTGATTTTTGCTTCAAACTCTGCATCAAGAGAAGATAGACTGGCTAGTGCCAGAAACAGGTCTTCTCATAATTCAAGGCCTTCCTTTTTAATTCGGATGGCCATGAGAATATCCAGAGCAAGATGGTTCACCTTCTTAAGAAGAGTTTTCCATTACCAAAATGGATCAAGGTCTGACCTTGGCTCCAATCCTTTCAATTCCAGCACATGGATGACATTAGAGTTGATTGCTCTGATGGTCCAGATAACCCTCACAACCTTGGTTTTGTCCATTTCTAAGAGGGAGAGACCTGTTTGGCCTATGAGGATATGGATTTCTGGTTATGATATTGGCTGTCTGCTCAATCTGCTGCTGCTTTATGGCCGCTATCGTCAGCTTTATTTGTCTCATGGAGATGCTCTTAGCCTCTCTGATATGGAACAGCAGAGAGGCAATGAAGAAACCAGGTGTTCACATTTGATGAACAAATGCAGGACTTCACTGGAGCTTTTCTTCGCCATATGGTTTGTCATGGGAAATGTTTGGGTTTTTGACTCACGTTTTGGGTCATTTCAAAGTGCTCCAAAACTGCATGTGCTCTGCATCGCCTTGCTTGCATGGAATGCCATAACCTACTCTTTCCCTTTCCTTCTATTCCTCCTGCTCTGCTGCTGTGTGCCTCTAATCAGCAGCCTCCTCGGTTACAACATGAACATGGCATCTTCTGATAAGGGAGCTTCTGATGATCAAATCTCACAGCTTCCAAGTTGGAGATACAAGCAAGTTCATAACAAGTTGGAGAATGGCCATGATTCTGCAGCCAGTGAAGGGCTGGTCAATGAAGATCCTGAATGTTGCATTTGCTTGACCAAATACAAAGATAGAGAAGAAGTGAGGCAATTGCCATGTTCTCATATGTTTCACCAAAAATGTGTGGATCAATGGCTGAGAATCATATCTTGTTGCCCCCTATGTAAACAAGGATTACAAAGATAG 990 0.4313 MNSGILIFASNSASREDRLASARNRSSHNSRPSFLIRMAMRISRARWFTFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELIALMVQITLTTLVLSISKRERPVWPMRIWISGYDIGCLLNLLLLYGRYRQLYLSHGDALSLSDMEQQRGNEETRCSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQSAPKLHVLCIALLAWNAITYSFPFLLFLLLCCCVPLISSLLGYNMNMASSDKGASDDQISQLPSWRYKQVHNKLENGHDSAASEGLVNEDPECCICLTKYKDREEVRQLPCSHMFHQKCVDQWLRIISCCPLCKQGLQR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4170g00009 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 328 IPR013083 -
Pral4170g00009 329 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 18 327 - -
Pral4170g00009 329 ProSiteProfiles Zinc finger RING-type profile. 283 324 IPR001841 -
Pral4170g00009 329 Pfam Ring finger domain 282 324 IPR001841 -
Pral4170g00009 329 SMART ring_2 283 323 IPR001841 -
Pral4170g00009 329 SUPERFAMILY RING/U-box 273 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4170g00009 Pral-Chr4170 118844 123049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4170g00009 34 327 C3H Transcription Factor Family AT4G26580 73.311 5.97e-155 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4170g00009 - - gmx:100813670 529.25