Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4164g00023 ATGGATCCGGCTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGCTCATGAGCCAAATTATCGGGTGGGTGGTTCATATGACGAAAGGAGGTTTATAGATGAAAGATACTCAAGGGATAATATATACCAAAGAGGTGCCCTCCCCCGTGATGCTTTGGATAGGGAGGCATATCCTCCATCAGGACCTGCTGTTGGCCATTGGAGTGAATCCAAGCGGAGAGGTTATGATGAAGACTATTTGCTGGACAAGGAATCTAGACGTCTTCAAAGGCCTTACTATGATTCATATAATCAGATTGATGCTTTCAGAGATAGGGAGGTTGACATGTATCCAGAATTTGACAAGTTTCGAGATGGCTATGCCAGCATTGAAAACTATGATGATCGAGGATATGATAAACTTGGTAGGTTTGGGGTACATGATCATGATGACTATGCATATGATGATTATGGCTACAAGTCTCGTGTATCCCATCATTATAGGGAGGATAGCCATGAGAGGGATATCGATCATGGCCGTCATAGTCATGATTCTGATTATGGGAGAAGTAGAAGAGATAGCAATTGGAGGCGGCGTGAATCTCGTGACCGAGAACATGATAGAAGATATTCAAGTAGGGAAAGAGATTTGAGTCCGCGTAGGAGGCATGAGCGGTCTCGATCCCGTTCTCGGTCTCGGTCTCGATCCCGATCCCACTCTCATTCTCATTCCCATTCACGCTCTCGTTCCCAATCTCATGGATATGATGATCATCCAAGATCAAGGTCCCCACGAGGTCGAAGTCATGGTCGAAGTTATCGAGAAGACAGCTATGCTGATGGTCGATATGAGAGAAGTGAAAAGCGAAGGGATCGTGAAGAGAAGCGGCGTGAGCATTATTCAGTGGCTCCATCTGCCACTGTTGTTGTAAAAGGTCTTTCACAAAATGCCAACGAAGAAGATCTATACCAAATTCTTGCGGAATGGGGGCCACTTCGGCATGTTCGTGTTATAAAGGAGCGAAATTCTGGCATTTCTCGTGGATTTGCATTTATTGATTTCCCTTCTGTGGGAGCTGCTCGAGCAATGATGGACAAACTTGGAGATGATGGTCTTGTTGTGGACGGTAGAAGGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCTATGAAATCAGGTCATAATCATAAAAGCATTACAGTACCATCTGATTGGATGTGCACCATATGTGATTACATCAATTTTGCCCGCCGAACATCCTGCTATCAGTGTAATGAACCACGAAGTGAGGATGCTCCTGCAGCAGATATTACGTTGTCAAATTCTACAGCCTCAGGAAAGAAAGGGTTAGAGGCAGGTCCAACTCATGTGCTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTTCGCTATGAGTTCTCCAAACATGCTCCTATTAAGGATCTACGTCTTGTGAGAGACAAGTTTACTCATGTCTCCAGGGGATTTGCTTTTGTACATTTTTATTCGGTGGAGGATGCCACCAAGGCTCTTGAAGCAACGAATGGAACAACTCTTGAGAAGAATGGACAGATTCTAAGAGTAGCATATGCAAAAAGTATCCTGGGTCCTGGGTCAGGAACATCTGGTACTTCCCAGTCAAGTAGCTTAGCAGCTGCTGCTATTGAGGCTGCGACATTTGCTCAACAGTATGATTCTGTTGGATGGGCCCCTAAAGAATACAATCCAGATGATAAACAATCTACTGGTCAAGAGCAAACTGGTGCAGCTCAGACAGATGCAATGGCTCCACAAACGGGCTTTGTTTGGGATGAGGCATCTGGTTATTACTATGATGCTGCTTCAGGGTTTTACTATGACGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCTTATGATCACAATACTCAGCAATATATCCCTTGCACTGATCAAACTGAGAATAAAGCTCCTGGTAATCAGTCTGAACCTTCCAAGGTGTCTGACAGTTCCAGCAGTAAAAAAGTGGTTATCTCTGCACCTGCTACTACTGTTGCATCCTCTGAGAAGCCAGCGTCTTTGGCAGATGCAGTCCAGGCTGCTGCAACTGCTGCCATAGCTGCAGAGAAGAAAGAAAAAGAAAAATTGAAGGAGATAAAGCTTGCTTCCAAAAGCAGTATTCTGGCTAACAAAAAGAAAATGAATAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGTCAAGCTACTCGTGTAGCTCTGGAAGACAATCACCAATCCACATCCATTGATGACAGGTCTTCTGGATATCCCACAAAGAGCAAGTTCAAAAATGAGACTACAGATACAAGGGAGTATAATGCATCCACTTCAGGGATTCCCACTGCCCCTGCTTCTCAGGCTGCCGCTTCAGATTCTCTGGTCCAACCACGGCCTGTTAGTAATAGCCTTGGAGGCACTCTGATGGGGGTTATAAGAGGATCTGGAAGAGGGATCATTAAATCTGATAGTTCTTATTCAGGGCCAACAGCTTCAGCCGTTTCATGTGCATCAGGCGCATCTTCATCGAATGTAGATGCTCCAACAGTTGCAACTCCCTTTAGAACAAATGTTTCTGCACTGGGTTCTTATGCTACACCTGTAGCTGGTGGAAGTGGTCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCCTCAGCCCCCAAGGAACAACCTCAAACTACCTACAGGGATCGTGCAGCTGAGAGAAGAAGTTTGTATGGTTCATCATTGTCAGCTGGGGATGATTTGGCTGATCTGGAACCTGGGGATTCAAGGTCTAGGTAA 2868 0.4512 MDPARYGLHQGWDNNSALEGYGAAHEPNYRVGGSYDERRFIDERYSRDNIYQRGALPRDALDREAYPPSGPAVGHWSESKRRGYDEDYLLDKESRRLQRPYYDSYNQIDAFRDREVDMYPEFDKFRDGYASIENYDDRGYDKLGRFGVHDHDDYAYDDYGYKSRVSHHYREDSHERDIDHGRHSHDSDYGRSRRDSNWRRRESRDREHDRRYSSRERDLSPRRRHERSRSRSRSRSRSRSHSHSHSHSRSRSQSHGYDDHPRSRSPRGRSHGRSYREDSYADGRYERSEKRRDREEKRREHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLVVDGRRLFFEYSSKPTGGPGGPFGQEGSMKSGHNHKSITVPSDWMCTICDYINFARRTSCYQCNEPRSEDAPAADITLSNSTASGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGQEQTGAAQTDAMAPQTGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHNTQQYIPCTDQTENKAPGNQSEPSKVSDSSSSKKVVISAPATTVASSEKPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNHQSTSIDDRSSGYPTKSKFKNETTDTREYNASTSGIPTAPASQAAASDSLVQPRPVSNSLGGTLMGVIRGSGRGIIKSDSSYSGPTASAVSCASGASSSNVDAPTVATPFRTNVSALGSYATPVAGGSGRRRFSEMPHSASAPKEQPQTTYRDRAAERRSLYGSSLSAGDDLADLEPGDSRSR 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4164g00023 955 MobiDBLite consensus disorder prediction 587 610 - -
Pral4164g00023 955 Pfam OCRE domain 614 662 IPR041591 -
Pral4164g00023 955 ProSitePatterns Zinc finger RanBP2-type signature. 418 437 IPR001876 -
Pral4164g00023 955 SMART rrm1_1 309 384 IPR000504 GO:0003723
Pral4164g00023 955 SMART rrm1_1 470 545 IPR000504 GO:0003723
Pral4164g00023 955 CDD OCRE_SUA_like 612 663 IPR035623 -
Pral4164g00023 955 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 549 IPR000504 GO:0003723
Pral4164g00023 955 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 388 IPR000504 GO:0003723
Pral4164g00023 955 ProSiteProfiles Zinc finger RanBP2 type profile. 414 443 IPR001876 -
Pral4164g00023 955 MobiDBLite consensus disorder prediction 172 302 - -
Pral4164g00023 955 MobiDBLite consensus disorder prediction 596 610 - -
Pral4164g00023 955 Gene3D - 449 574 IPR012677 -
Pral4164g00023 955 SUPERFAMILY RNA-binding domain, RBD 303 404 IPR035979 GO:0003676
Pral4164g00023 955 Gene3D - 273 410 IPR012677 -
Pral4164g00023 955 MobiDBLite consensus disorder prediction 851 876 - -
Pral4164g00023 955 MobiDBLite consensus disorder prediction 226 250 - -
Pral4164g00023 955 MobiDBLite consensus disorder prediction 891 955 - -
Pral4164g00023 955 SMART zf_4 416 440 IPR001876 -
Pral4164g00023 955 SUPERFAMILY Ran binding protein zinc finger-like 408 444 IPR036443 -
Pral4164g00023 955 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 471 537 IPR000504 GO:0003723
Pral4164g00023 955 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 370 IPR000504 GO:0003723
Pral4164g00023 955 SUPERFAMILY RNA-binding domain, RBD 467 556 IPR035979 GO:0003676
Pral4164g00023 955 MobiDBLite consensus disorder prediction 56 78 - -
Pral4164g00023 955 MobiDBLite consensus disorder prediction 172 225 - -
Pral4164g00023 955 Gene3D - 411 444 - -
Pral4164g00023 955 MobiDBLite consensus disorder prediction 664 688 - -
Pral4164g00023 955 MobiDBLite consensus disorder prediction 770 830 - -
Pral4164g00023 955 CDD RRM1_RRM2_RBM5_like 467 547 - -
Pral4164g00023 955 MobiDBLite consensus disorder prediction 798 830 - -
Pral4164g00023 955 PANTHER RNA-BINDING PROTEIN 204 935 - -
Pral4164g00023 955 MobiDBLite consensus disorder prediction 251 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4164g00023 Pral-Chr4164 148517 156321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4164g00023 307 533 Eukaryotic Initiation Factors Gene Family AT2G36660 25.591 1.90e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4164g00023 K13094 - gmx:100777686 1274.23