Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4164g00017 ATGGCGATGTTATTGAGGAAAATGTGGGAATCGGTGTCGAACCGTTCCAGTTCGGGTTCAAATTCCAACTCGCCGGAACGCTTTCGGTGCGTGGATTCCCCTCTGGGTGTGTTCGAGCAAATTCCTTCCGATATATTGATCCAAATCCTGAGGCTTCTGGGTCCCAAAGAAGCTGCTAGGTTGAGTCTTGTGTGCAAAGCATGGAGATCGCTGGCCTCCGATAATCGACTGTGGATTTATTTCCTTCAGACTTGCCAATTGGAGCCATGGGATACCATTTTTTTCGCCGAGACCAATTTGAGGTCCGGTCATCCTCTTCCAACCTTAGTTGGTCAGATGTCTCAGCTATCTTTCAAGCGTATATATGGCTTACGAGAACAAGTTCCTGGTGCTGTTATCATCGATGGTGGTTCTGGCTATTGCAAGTTTGGTTGGAGCAAATATGACAGCCCATCAGGGCGATCAGCTACGTTTTTGGAATTCGGTAACCTTGAGTCTCCAATGTACACTAGACTTAGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTTAAACCAAGTACTCAACCAGTCATTGTTTCTATTCCAATATGCCATTATGATGATACCGAATCTGCCAAAGCATCAAGGCGGCAGCTTAAGGAGGCAATATGTGCCGCCCTCTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCCACTTTGGCTCTGTATGCTGCAAAACAAACTTCTGGAATAGCTGTTAATGTTGGTTTTCAGGTCACATCTATAGTTCCAATTCTGAATGGTAAAGTCATGCGCAAGGTGGGTGTGGAAGTTGTGGGACTGGGAGCGATCAAACTTACAGGATTCCTTAGGGAGCTGATGCAGCGGAACAACATGAATTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGGAGCTATGCTATGTTGCTATTGATTATGAAGCTGAACTATTGAAAGATACGCAAGCATCGTTTGAAGCAGCGGGAGAAGGATGGTTTACACTTTCGAAAGAGCGTTTTCAAACAGGAGAGATCTTGTTCCAGCCTCGGCTTGCTGGATTGCAAGCAATGGGTTTGCACCAGGCTGTAGCTCTTTGTATGGACCATTGCCATTCTGCAGAATTAGCAGGTGACCCTGATTGGTTTAAGACTGTGGTTTTATCAGGGGGAACTGCATGCTTACCAGGTCTAGCAGAAAGGTTAGACAAGGAACTCCGTGATTTATTACCTCCCCAGTTGTCCAGTGGAATCGAAGTCATACCTCCTCCATATGGTGCTGAAACTGCATGGTTTGGAGCAAGGACTATTGGCAATTTGAGTACCTTTCCTGGTCCATGGTGTATAAAGAAGAAGCACTTCCACAAGTCTCGACTCAATCTCATATGGTGA 1407 0.4534 MAMLLRKMWESVSNRSSSGSNSNSPERFRCVDSPLGVFEQIPSDILIQILRLLGPKEAARLSLVCKAWRSLASDNRLWIYFLQTCQLEPWDTIFFAETNLRSGHPLPTLVGQMSQLSFKRIYGLREQVPGAVIIDGGSGYCKFGWSKYDSPSGRSATFLEFGNLESPMYTRLRHFFATIYNRMQVKPSTQPVIVSIPICHYDDTESAKASRRQLKEAICAALFDMNVPAVCAVNQATLALYAAKQTSGIAVNVGFQVTSIVPILNGKVMRKVGVEVVGLGAIKLTGFLRELMQRNNMNFESLYTVRTLKEELCYVAIDYEAELLKDTQASFEAAGEGWFTLSKERFQTGEILFQPRLAGLQAMGLHQAVALCMDHCHSAELAGDPDWFKTVVLSGGTACLPGLAERLDKELRDLLPPQLSSGIEVIPPPYGAETAWFGARTIGNLSTFPGPWCIKKKHFHKSRLNLIW 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4164g00017 468 Gene3D - 176 460 - -
Pral4164g00017 468 ProSiteProfiles F-box domain profile. 35 81 IPR001810 GO:0005515
Pral4164g00017 468 SUPERFAMILY Actin-like ATPase domain 246 457 IPR043129 -
Pral4164g00017 468 CDD F-box_AtARP8-like 38 81 - -
Pral4164g00017 468 CDD NBD_sugar-kinase_HSP70_actin 132 276 - -
Pral4164g00017 468 SMART actin_3 129 459 IPR004000 -
Pral4164g00017 468 SUPERFAMILY F-box domain 35 93 IPR036047 GO:0005515
Pral4164g00017 468 Gene3D - 33 104 - -
Pral4164g00017 468 Gene3D - 236 434 - -
Pral4164g00017 468 SUPERFAMILY Actin-like ATPase domain 130 251 IPR043129 -
Pral4164g00017 468 PANTHER ACTIN 173 460 IPR004000 -
Pral4164g00017 468 Pfam Actin 178 456 IPR004000 -
Pral4164g00017 468 Gene3D Actin; Chain A, domain 4 279 362 - -
Pral4164g00017 468 SMART fbox_2 41 81 IPR001810 GO:0005515
Pral4164g00017 468 Pfam F-box-like 39 78 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4164g00017 Pral-Chr4164 112157 118875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4164g00017 178 458 Cytoskeleton Gene Families AT3G12110 31.379 1.26e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4164g00017 K16616 - qsa:O6P43_013433 752.281