Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4164g00016 ATGGCGATGTTATTGAGGAAAATGTGGGAATCGGTGTCGAACCGTTCCAGTTCGGGTTCAAATTCCAACTCGCCGGAACGCTTTCGGTGCGTGGATTCCCCTCTGGGTGTGTTCGAGCAAATTCCTTCCGATATATTGATCCAAATCCTGAGGCTTCTGGGTCCCAAAGAAGCTGCTAGGTTGAGTCTTGTGTGCAAAGCATGGAGATCGCTGGCCTCCGATAATCGACTGTGGATTTATTTCCTTCAGACTTGCCAATTGGAGCCATGGGATACCATTTTTTTCGCCGAGACCAATTTGAGGTCCGGTCATCCTCTTCCAACCTTAGTTGGTCAGATGTCTCAGCTATCTTTCAAGCGTATATATGGCTTACGAGAACAAGTTCCTGGTGCTGTTATCATCGATGGTGGTTCTGGCTATTGCAAGTTTGGTTGGAGCAAATATGACAGCCCATCAGGGCGATCAGCTACGTTTTTGGAATTCGGTAACCTTGAGTCTCCAATGTACACTAGACTTAGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTTAAACCAAGTACTCAACCAGTCATTGTTTCTATTCCAATATGCCATTATGATGATACCGAATCTGCCAAAGCATCAAGGCGGCAGCTTAAGGAGGCAATATGTGCCGCCCTCTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCCACTTTGGCTCTGTATGCTGCAAAACAAACTTCTGGAATAGCTGTTAATGTTGGTTTTCAGGTCACATCTATAGTTCCAATTCTGAATGGTAAAGTCATGCGCAAGGTGGGTGTGGAAGTTGTGGGACTGGGAGCGATCAAACTTACAGGATTCCTTAGGGAGCTGATGCAGCGGAACAACATGAATTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGGAGCTATGCTATGTTGCTATTGATTATGAAGCTGAACTATTGAAAGATACGCAAGCATCGTTTGAAGCAGCGGGAGAAGGATGGTTTACACTTTCGAAAGAGCGTTTTCAAACAGGAGAGATCTTGTTCCAGCCTCGGCTTGCTGGATTGCAAGCAATGGGTTTGCACCAGGCTGTAGCTCTTTGTATGGACCATTGCCATTCTGCAGAATTAGCAGGTGACCCTGATTGGTTTAAGACTGTGGTTTTATCAGGGGGAACTGCATGCTTACCAGGTCTAGCAGAAAGGTTAGACAAGGAACTCCGTGATTTATTACCTCCCCAGTTGTCCAGTGGAATCGAAGTCATACCTCCTCCATATGGTGCTGAAACTGCATGGTTTGGAGCAAGGACTATTGGCAATGGCCGGCCCATATGGTGA 1350 0.4578 MAMLLRKMWESVSNRSSSGSNSNSPERFRCVDSPLGVFEQIPSDILIQILRLLGPKEAARLSLVCKAWRSLASDNRLWIYFLQTCQLEPWDTIFFAETNLRSGHPLPTLVGQMSQLSFKRIYGLREQVPGAVIIDGGSGYCKFGWSKYDSPSGRSATFLEFGNLESPMYTRLRHFFATIYNRMQVKPSTQPVIVSIPICHYDDTESAKASRRQLKEAICAALFDMNVPAVCAVNQATLALYAAKQTSGIAVNVGFQVTSIVPILNGKVMRKVGVEVVGLGAIKLTGFLRELMQRNNMNFESLYTVRTLKEELCYVAIDYEAELLKDTQASFEAAGEGWFTLSKERFQTGEILFQPRLAGLQAMGLHQAVALCMDHCHSAELAGDPDWFKTVVLSGGTACLPGLAERLDKELRDLLPPQLSSGIEVIPPPYGAETAWFGARTIGNGRPIW 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4164g00016 449 Pfam F-box-like 39 78 IPR001810 GO:0005515
Pral4164g00016 449 SUPERFAMILY F-box domain 34 92 IPR036047 GO:0005515
Pral4164g00016 449 Pfam Actin 178 439 IPR004000 -
Pral4164g00016 449 ProSiteProfiles F-box domain profile. 35 81 IPR001810 GO:0005515
Pral4164g00016 449 Gene3D - 236 434 - -
Pral4164g00016 449 SUPERFAMILY Actin-like ATPase domain 246 443 IPR043129 -
Pral4164g00016 449 CDD F-box_AtARP8-like 38 81 - -
Pral4164g00016 449 CDD NBD_sugar-kinase_HSP70_actin 132 276 - -
Pral4164g00016 449 PANTHER ACTIN 173 441 IPR004000 -
Pral4164g00016 449 SMART actin_3 129 448 IPR004000 -
Pral4164g00016 449 Gene3D - 175 443 - -
Pral4164g00016 449 Gene3D Actin; Chain A, domain 4 279 362 - -
Pral4164g00016 449 SMART fbox_2 41 81 IPR001810 GO:0005515
Pral4164g00016 449 SUPERFAMILY Actin-like ATPase domain 130 251 IPR043129 -
Pral4164g00016 449 Gene3D - 33 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4164g00016 Pral-Chr4164 112155 118875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4164g00016 178 444 Cytoskeleton Gene Families AT3G12110 30.797 9.13e-35 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4164g00016 K16616 - qsa:O6P43_013433 713.375