Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4164g00004 ATGCCTCCGTACCAGCAGCTGGTTCACTGCGCGAGCGCTGCTCGAATCACACAGACTCTTCAACGTCCCAGCCTCATCATCTTCTTCTTCATCGGATCTGGGGATTTCAAAAATTTCAAAGAATTATCTGAACTCGTCACACCAGAGAAGAAGGCTCCTCCGCAATGTCGACCAAAACAAAAATCAAATAGTAATGATGTCGTGGAACCAAGACGCTCTTCTCGCGTGCGAAATTCTGTTCCTTCATATCGTGAGGAGGTATTCATAGATCTTCCACCTTTGCGGAAGAGGTCAAGGTCGTCTTCATCATGGGGAAGTTATGTTGCAAGGCCACTAGATGAAATAAAAGAAGCCACAGATGAAGAAAGAAATCGTGCTTTCATGGCTGCAGAAACACTTCTAAGCGATTTACAGACTTCAAATCCAGCATTTATTAAGTCAATGGTCCGGTCTCATGTTTATAGTTGCTTTTGGCTGGGTCTCCCTAATAGATTTTGCCACGACCATCTTCCTAAGACTACGTGTGACATGATTTTAGAGGATGAAAATGGCTCAGAATTTGAGGCTGTTTTCCTTGGCAATAGAACTGGGCTCAGCGGAGGGTGGAGAGGATTTGCATTGGATCATAAGTTGGATGATGGTGATGCACTTGTTTTTGAATTAGTTGAACCTACCAGATTTAAGATTTACATTGTCAAAGCCTTTCCAGAATCAGCTGAAGATGGACAAGAGATTTTGGATGAACAAGTTGATACTTGTGCAACCAAGAAGCACAAACCACAATCAAACAAGACAAAAATTCTTAAACAAGGTATTGTGCATGAAACTAAAGAATCTGCAAATTCTCAGGAATACATTGCAGAAAATAATGCAGACAATGGAATCGAGCCACAAGGGCTAAACACAACCAGGAAAACTAGGTTTTCTCAGAGAAAATCTCAGAAAGAATCTGAAGATTGTAAACTGCTTCCTTCTGATGGTTCTATAAAGGAAGAAAACATTGAACAAGGGAAAAATTGTACTCCTAAGAAAGCAACTTCTCAAGCAAACAAAACAAGGTCAAAACGTGGTACACGAAACAAATGA 1086 0.4098 MPPYQQLVHCASAARITQTLQRPSLIIFFFIGSGDFKNFKELSELVTPEKKAPPQCRPKQKSNSNDVVEPRRSSRVRNSVPSYREEVFIDLPPLRKRSRSSSSWGSYVARPLDEIKEATDEERNRAFMAAETLLSDLQTSNPAFIKSMVRSHVYSCFWLGLPNRFCHDHLPKTTCDMILEDENGSEFEAVFLGNRTGLSGGWRGFALDHKLDDGDALVFELVEPTRFKIYIVKAFPESAEDGQEILDEQVDTCATKKHKPQSNKTKILKQGIVHETKESANSQEYIAENNADNGIEPQGLNTTRKTRFSQRKSQKESEDCKLLPSDGSIKEENIEQGKNCTPKKATSQANKTRSKRGTRNK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4164g00004 361 MobiDBLite consensus disorder prediction 289 361 - -
Pral4164g00004 361 MobiDBLite consensus disorder prediction 339 353 - -
Pral4164g00004 361 ProSiteProfiles B3 DNA-binding domain profile. 144 235 IPR003340 GO:0003677
Pral4164g00004 361 MobiDBLite consensus disorder prediction 289 307 - -
Pral4164g00004 361 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 50 234 IPR044837 -
Pral4164g00004 361 Gene3D - 118 235 IPR015300 -
Pral4164g00004 361 Pfam B3 DNA binding domain 144 231 IPR003340 GO:0003677
Pral4164g00004 361 SMART B3_2 144 235 IPR003340 GO:0003677
Pral4164g00004 361 MobiDBLite consensus disorder prediction 48 78 - -
Pral4164g00004 361 MobiDBLite consensus disorder prediction 309 338 - -
Pral4164g00004 361 CDD B3_DNA 142 233 IPR003340 GO:0003677
Pral4164g00004 361 SUPERFAMILY DNA-binding pseudobarrel domain 138 233 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4164g00004 Pral-Chr4164 8847 12877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4164g00004 23 234 B3 DNA Binding Superfamily AT5G58280 52.294 1.08e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4164g00004 B3 2.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4164g00004 - - pcin:129303902 490.73