Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4162g00017 ATGCTTGCTGCTGCTTCTTTTACTTCCAAACGCATTCGAGCTTCGGAGTTTCTTCAACGTGATGGTAGACCCGTGATGGCGTCACGCGGTGCTACTGCCATAAGTTATTTTGAAAATTCTGCTTTTGTTGTTTTGAGCAGGAACTATGGGATTGGCAATCGAGTTCGATCGATTGTTAGTCTCTCTGGCATCAGCACATTCCCCAGTCGTAATAGGATCAGTAGAGATTGCTTTAGGGTCAATCCGATTGCTCCCAGAAGATCTACAAGTTTATTTCTTAGTATAAAGGGGTTTCTCTCTGATTCATCAAATTCTAATTCCTATTCTTCAGTATATGGCAGAGTAACCAGACCATGCTTTCCACAACCTGGTTCAACGGTAGACGGACGAGCATTATTCTCAACTTCAACTAAAACTGATGATGGAACGTCCTCAAAGAAGACCGAGACCCAGAACCAAAAAACTACAACCACGATTACTAAAACTTCTTCAGGGGAACGAGTTGCTGACATTAAAATTCTCCGTACACTTGCGAGTTACTTGTGGATGAAGGATAATCTTGAATTCCGATTCCGGGTTATTGCTGCTTTGGGTTTTCTTGTTGGTGCTAAGGTTCTGAATGTTCAGGTCCCTTTCTTATTCAAGCTTGCAGTTGATTGGTTGACGACTGCTACAGGCAATGCTGGTGATCTTGCTTCTTTTACAGCTGCAAATTCAACTCTGTTGGCTATTTTCGCAACTCCAGCATCTGTTTTAATCGGATATGGAATTGCTCGTTCAGGAGCTTCTGCTTTCAATGAACTGCGTACTGCTGTATTCTCTAAGGTAGCGTTGCGAACAATTCGATTAGTATCTAGAAAGGTGTTCTCTCATTTGCATGAGCTTGACCTACGCTATCACCTAAGCCGAGAAACTGGAGCATTAAATAGAATAATTGATCGTGGTAGTCGTGCAATAAATTTTATACTCTCATCTATGGTGTTCAATGTAGTACCCACTGTATTAGAGATATCTATGGTATCAGGTATACTGGCTTACAAATTTGGAGCACCTTTTGCATGGATCACATCCTTATCGGTGGCTGCTTATGTTATTTTTACACTGACTGTGACACAGTGGAGGACTAAATTCAGGAAGGCCATGAATAAAGCTGATAATGATGCAAGTACCAGGGCAGTTGATTCACTTATTAATTATGAGACTGTCAAGTATTTCAATAATGAAGATTTTGAAGTTGAAAAATATGACGAGTACCTAAAGAGGTATGAAGATGCTGCTCTGAAAACACAACGCAGTCTTGCTTCTCTGAATTTCGGCCAAAATGTTATATTTAGTACTGCACTTTCTACGGCAATGGTGTTGTCTTCTCATGGGATTATGAGTGGCCAGATGACTGTTGGTGATTTGGTGATGGTGAATGGGCTCCTCTTCCAACTTTCTCTTCCGCTTAACTTCCTTGGCAGTGTTTATCGTGAGACTATACAGAGTTTAGTTGACATGAAATCAATGTTTCAGTTACTTGAGGAAAGAGCTGATGTTAGGGATAAAGACAATGCAAAGCCGCTGGAATTATATGGAGGGAGCATAGAGTTTGAAAATGTACATTTCAGTTACCTTGCAGAGAGGAAAATACTCGATGGAATATCTCTTATTGTACCAGCCGGAAAAAGTGTGGCAATTGTTGGAACTAGTGGAAGTGGTAAATCAACCATTCTTAGATTGCTCTTCAGGTTTTTTGACCCTCATTCTGGAAGTATAAAGATAGATGGTCAAAACATCCAGGATGTAACCCTTGATAGTCTTCGGAGGTCTATTGGGGTTGTTCCGCAAGATACTGTACTTTTCAATGATACAATATTCCACAACATCCATTATGGTCGACTTTCAGCCACTAAAGAGGAAGTCTATAAAGCTGCTCAACAAGCAGCAATTCATGACACTATCATGAATTTTCCTGAAAAATATTCAACTGTTGTGGGAGAGCGAGGGCTCAAGTTAAGTGGTGGTGAAAAGCAACGTGTTGCCTTGGCTCGTGCGTTTTTGAAAGCACCTCCAATTCTGTTATGTGATGAAGCTACGAGTGCACTTGACAGCACAACTGAAGCAGAGATATTAAATGCTTTGAAATCTTTAGCAAATAATCGCACTTCCATATTCATTGCTCACAGGCTTACTACTGCAATGCAGTGTGATGAGATCATAGTGTTGGAAAATGGAAAGGTGGTTGAACAAGGACCACATGAGCTGCTCTTATCTGAGGCTGGAAGATACGCACAACTGTGGGCCCAGCAAAATAACACAGTTGATGCAGCGATGAAAGTTGCGGCATAA 2331 0.411 MLAAASFTSKRIRASEFLQRDGRPVMASRGATAISYFENSAFVVLSRNYGIGNRVRSIVSLSGISTFPSRNRISRDCFRVNPIAPRRSTSLFLSIKGFLSDSSNSNSYSSVYGRVTRPCFPQPGSTVDGRALFSTSTKTDDGTSSKKTETQNQKTTTTITKTSSGERVADIKILRTLASYLWMKDNLEFRFRVIAALGFLVGAKVLNVQVPFLFKLAVDWLTTATGNAGDLASFTAANSTLLAIFATPASVLIGYGIARSGASAFNELRTAVFSKVALRTIRLVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTVLEISMVSGILAYKFGAPFAWITSLSVAAYVIFTLTVTQWRTKFRKAMNKADNDASTRAVDSLINYETVKYFNNEDFEVEKYDEYLKRYEDAALKTQRSLASLNFGQNVIFSTALSTAMVLSSHGIMSGQMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEERADVRDKDNAKPLELYGGSIEFENVHFSYLAERKILDGISLIVPAGKSVAIVGTSGSGKSTILRLLFRFFDPHSGSIKIDGQNIQDVTLDSLRRSIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYKAAQQAAIHDTIMNFPEKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVVEQGPHELLLSEAGRYAQLWAQQNNTVDAAMKVAA 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4162g00017 776 ProSitePatterns ABC transporters family signature. 666 680 IPR017871 GO:0005524|GO:0016887
Pral4162g00017 776 Pfam ABC transporter transmembrane region 194 482 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4162g00017 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 764 IPR027417 -
Pral4162g00017 776 Pfam ABC transporter 545 694 IPR003439 GO:0005524
Pral4162g00017 776 SUPERFAMILY ABC transporter transmembrane region 188 508 IPR036640 GO:0005524|GO:0016020
Pral4162g00017 776 CDD ABC_6TM_ATM1_ABCB7 196 503 - -
Pral4162g00017 776 FunFam ATP-binding cassette sub-family B member 7 165 517 - -
Pral4162g00017 776 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 153 760 IPR039421 -
Pral4162g00017 776 Gene3D ABC transporter type 1, transmembrane domain 180 519 IPR036640 GO:0005524|GO:0016020
Pral4162g00017 776 Gene3D - 522 774 IPR027417 -
Pral4162g00017 776 SMART AAA_5 554 740 IPR003593 GO:0016887
Pral4162g00017 776 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 194 495 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4162g00017 776 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 529 763 IPR003439 GO:0005524
Pral4162g00017 776 MobiDBLite consensus disorder prediction 135 161 - -
Pral4162g00017 776 FunFam ABC transporter B family member 25 521 775 - -
Pral4162g00017 776 CDD ABCC_ATM1_transporter 529 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4162g00017 Pral-Chr4162 89983 101129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4162g00017 365 772 Calmodulin-binding Proteins AT2G36910 35.800 2.78e-64 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4162g00017 K05662 - gmx:100787870 1093.57