Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral415g00006 ATGAGAAGAACCAATAATTCTGCTCTCTCACCTGAGTCTCGCAGAACGGGTGTTAGAGCCTCTGCTCACGATACTCCCACCAATAGGCACTCTGTCGAGGCGCTTGCGAGTCCTTCTAGACTTACCACTCCTCCTCAGATGACACCAAGTCCACTGAATCCTCTGGGGTATATGGCAGATAGAAGGCAAGCAGGGCTCTACAGCATACCTGAAAGTGACTCTTACGAGGTGCCCGTGTCCTACCAAGATTTTTCAAGACCTGCCACTTATGTTCAGACGACTCCAAGTCCACAGAATCCTCCGTGGTACCCAGCTGATAGAAGGCATGCAGGACACTACAGCATACCTGACGACTCTTATGAGGTGCCAGTGTTCTACCGATCTTCTTCAAGACAAGCCAGTCCTTATTTTCAGGACGAGAGAACATCAAATGTAGTCAATTATCCACGATTTCTGGAAGACAGTTTTCCAGCACAACCGCGCATTCGAGGTACAGGAATGGGATTTAACCCCAGGCTCAGAGAAACTCGCCAGCCATCAGTTCCACCTCGAAGATACGCACGCCAATCAGACACACAAGCTCCAACTTCGCTAGAAAATCCCAGATCTAGAGCATTGAGCAAGCTGAAGAAAGAAATCTACCAACCCACTATTTCAACTTCAAAAACTCTAGCGAAGAAATTGAGCTTCTATTACAGAGACCCTAAAGGTGTGAATGCGTTAAAGGAGATCGAGAACACGGAAAAGAACGAGAAGGGAAAGAGTTGTGCGGTGTGCTTAGAGGATTTCGTGCCGAAACAGGAGGTAATGGTGACGCCTTGCAAGCACATGTTTCATGAGGATTGTATAATGCCATGGCTGAGAAGCCAAGGTCAGTGTCCAATCTGTAGATTTGTGATCTGCGAAAAAGAGAGGGAGAATCCATTGCCGCTGAACGACGACGATGTTGGCACCAATTACCTAATAGCAGGGGAGCTTCTGTCTATTGCGAGGGCCATGGAAGAAGCCTTCCTATTGCGTCCGGAACCTCACTGA 1035 0.4812 MRRTNNSALSPESRRTGVRASAHDTPTNRHSVEALASPSRLTTPPQMTPSPLNPLGYMADRRQAGLYSIPESDSYEVPVSYQDFSRPATYVQTTPSPQNPPWYPADRRHAGHYSIPDDSYEVPVFYRSSSRQASPYFQDERTSNVVNYPRFLEDSFPAQPRIRGTGMGFNPRLRETRQPSVPPRRYARQSDTQAPTSLENPRSRALSKLKKEIYQPTISTSKTLAKKLSFYYRDPKGVNALKEIENTEKNEKGKSCAVCLEDFVPKQEVMVTPCKHMFHEDCIMPWLRSQGQCPICRFVICEKERENPLPLNDDDVGTNYLIAGELLSIARAMEEAFLLRPEPH 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral415g00006 344 SUPERFAMILY RING/U-box 248 304 - -
Pral415g00006 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 312 IPR013083 -
Pral415g00006 344 Pfam Ring finger domain 255 297 IPR001841 -
Pral415g00006 344 MobiDBLite consensus disorder prediction 1 49 - -
Pral415g00006 344 MobiDBLite consensus disorder prediction 1 43 - -
Pral415g00006 344 MobiDBLite consensus disorder prediction 157 202 - -
Pral415g00006 344 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 39 298 - -
Pral415g00006 344 SMART ring_2 256 296 IPR001841 -
Pral415g00006 344 MobiDBLite consensus disorder prediction 183 202 - -
Pral415g00006 344 FunFam RING/U-box superfamily protein 240 314 - -
Pral415g00006 344 ProSiteProfiles Zinc finger RING-type profile. 256 297 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral415g00006 Pral-Chr415 30542 33461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral415g00006 200 339 C3H Transcription Factor Family AT3G58720 46.575 1.64e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral415g00006 - - pcin:129314308 411.379