Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4154g00001 ATGTCGTGGAAAGCCCTTATTCCTAATAATCCCATAGATGCATCTGAACGCTATATATCGTTGGCCGAACCACTCAGCGCTGCCAACTTCTGTCATTCCTGCTTCTATAATCTTTCTGGTAAGGCTGAGATTTGCCATATTGACTCTTGCTGCTATTTCCAGAGGGCCGCAAATGATTCAAACGAACCTAATTCCACACTTCCTCCAGTTCTCAAGTGGCACATAGTTGCAAGAGTTTTCAGGAAATGGAATGTCTTCCATAAGGGATCATCTGCTGATATCTTCTGCGTGACAATGGTTTTATTAGACAAAGAGGGGGATAAAATACAAGCAAGTGTTCTAACCAAAAGTTTACATGACAAGTTTTGCCACAGTATTATTGAAGGAGAGACTTATTTCTTTGCTAATTTTGAGGTCTCTGCTAATGTTAGCCAATATAGAGCTACCACTCATCCTTTCAAGATCACTATAACTCCACGAACACATGTTGCTGAGAAAATAGCCATTGTGCCATCTTATTCCTACTCTTTCTTTCCACTTGCTGAGATAGAGAAACTTAATGAGAAGCATAATATTGAATACTTGATAGACGTTTTAGCATTGGTCAAATCAATTGGCACTCTTGAAGAATATCGGCGGGACAATGAAACCAAGAATAAATTAAGGATGGTGCTGAGTGACATTGAGTACAGAACCTTTCACGGAATCAATGTAGAATGTATATTATTTGATGAATGTGCCAGCGATGCTTTCATGTCTCAGCTCCAGAATACACAGACACCTGTTGTGGTGTTGTTAAACCTGGCTAGGGTTGGTTTTTCAGAAGATGGAAGAGCACAGGTTTGCAATTCTTTTAATGCCACAAGGGTGTTTTTCAACCCACCCATCAAGGAAGTGCAACTAATGATTGATAGTTCAAAAGACAATGGCTCTCCAAGTTTGTCCTTCCTTAGCCAGCCCATACTAACTCCACTGAGTCAACAGTCACGTACTAGCATCAATTGCAACCAAAGCCCGATTGCTATATCAAACATAAAAGATCAACCCATGGGAGAAACTTTTGTCATTAGGTGCATTATTCAAAAGTTAGAGACCAGATATGGTTGGATCTATCAAGGTTGCTCCAAGTGTGGTACAAAGCTTCGTTTAGAGAATGAGAGTTGGATATGCCCATCATGTCAGAAGAAACCAGAGTTTATTGACCACAAGATGAAGCTTCATTACACTGTGAAAGATGAGACAGGAATTGCTTCAATAATATTCTGGGATAAACTTGCAGTTGAGTTAATTAAAAATTCAGCCGCTGAGTTGAAGGTTATTCTAGATGAGGATCCTGAGGAAGTTGATTTCCCCAAAAATCTGGACAATCCTGTTGGGAAGAGTATGTTGTTGACTCTTAAACTGAATGACTACAATAAACGACATCCAAGTTCCAGTATTAGTGTAATGCAATATCATTTATGTGAAGATTTAATGGATCAATTTACTGAGGCATCCATTGAGTATTCACAACCTGCTGTGGAACAAAGTCAGGAACATATGAATGTTACTCAAGGAGTTCCTCTAATTGCGGAAAAAGATTTAGTTTCACAATGTGTTGCTGAAGAGGATGTCACACTTTCAAATATGGTCAACCGTGTTAAAGCTCCTCCAGTTAAAGGGAGAAAAAGAAGCGTCGTGAGGAAGAATGTTGAGGATGCTATTGCTGAGGGTACTAACACTGGATCAAGCTCAAGTAATGAACAGAAGCATGTGAAAACTATCAAGTTGGAGAAGTAG 1779 0.3946 MSWKALIPNNPIDASERYISLAEPLSAANFCHSCFYNLSGKAEICHIDSCCYFQRAANDSNEPNSTLPPVLKWHIVARVFRKWNVFHKGSSADIFCVTMVLLDKEGDKIQASVLTKSLHDKFCHSIIEGETYFFANFEVSANVSQYRATTHPFKITITPRTHVAEKIAIVPSYSYSFFPLAEIEKLNEKHNIEYLIDVLALVKSIGTLEEYRRDNETKNKLRMVLSDIEYRTFHGINVECILFDECASDAFMSQLQNTQTPVVVLLNLARVGFSEDGRAQVCNSFNATRVFFNPPIKEVQLMIDSSKDNGSPSLSFLSQPILTPLSQQSRTSINCNQSPIAISNIKDQPMGETFVIRCIIQKLETRYGWIYQGCSKCGTKLRLENESWICPSCQKKPEFIDHKMKLHYTVKDETGIASIIFWDKLAVELIKNSAAELKVILDEDPEEVDFPKNLDNPVGKSMLLTLKLNDYNKRHPSSSISVMQYHLCEDLMDQFTEASIEYSQPAVEQSQEHMNVTQGVPLIAEKDLVSQCVAEEDVTLSNMVNRVKAPPVKGRKRSVVRKNVEDAIAEGTNTGSSSSNEQKHVKTIKLEK 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4154g00001 592 Pfam Replication factor-A C terminal domain 354 449 IPR013955 -
Pral4154g00001 592 CDD RPA1_DBD_A_like 75 163 - -
Pral4154g00001 592 SUPERFAMILY Nucleic acid-binding proteins 175 308 IPR012340 -
Pral4154g00001 592 SUPERFAMILY Nucleic acid-binding proteins 71 165 IPR012340 -
Pral4154g00001 592 PANTHER OS03G0429900 PROTEIN 25 515 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral4154g00001 592 MobiDBLite consensus disorder prediction 554 592 - -
Pral4154g00001 592 MobiDBLite consensus disorder prediction 569 583 - -
Pral4154g00001 592 Gene3D - 67 166 IPR012340 -
Pral4154g00001 592 Gene3D - 325 494 IPR012340 -
Pral4154g00001 592 Pfam Domain of unknown function DUF223 99 177 IPR003871 -
Pral4154g00001 592 Gene3D - 170 313 IPR012340 -
Pral4154g00001 592 SUPERFAMILY Nucleic acid-binding proteins 340 468 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4154g00001 Pral-Chr4154 1431 6733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4154g00001 73 472 Core DNA Replication Machinery Family AT5G08020 23.022 1.97e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4154g00001 - - pcin:129290097 460.299