Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4152g00010 ATGTCTGCGGCTCCTGTACAGAGTCAGAGGCGCACAGAGCTGAGCTCTCATACGGAGAAAACGAAGCGAATCCCTCCACTGTTTGTCTCCAGCTTTAGTCTTACACCTAACACAGTAATACTGATCAATCCTTCTTCAAAAGAACGATGGGTGGTTGATATCGAGGAAGAAGATGAAGATCCCACAGAATTGTACTTCAAAGAAGGTTGGACTAAGTTTGTAAAAGAAAACACTTTAGAGACTGGGGACTTCCTAATTTTCAAATTTGATGGGAAGTTAAAATTCGAAGTTATTATCTGTGGAAAATCTGCCTGCGAGAAGTGGGTTGAGACTCAGGCAAAGGCACAGGCACAGGCACGTACTTATCAGAATCTCCACAGCCAAGGCCATAGTAAACAGACAGCATCAACTCAAGATCGTGGAGAAAATGGGAAAGGAAAAGATCTAATCGATGTTGAAGAAAGACCAAGTCTTGATGTTATTAAGATAAAGGAGGAGAGAGTAGATTCTGACGTATATGGCACTATTAGCCAAGAAACGTGCGATGAAACGTGGGCATCCCAGTCTGAAGATGAGGATTATGATGATGATGATGATGATGATGATGATGATGATTATGATGATGAAGAAGAAAAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGATGAATTTGATGATGTTAAATCTGAACCTCATGGTTCTATCTTGAATATTGGGGAGGACTACGGCAACTTGGGCTCCAAGATCCCTTCATTCAGCATCCATCTCCAGCACGCCTATGCAAAAAAGGGTTGCATGTGCATGCCAACTGACTTCTTCCATAAGTACATGAGAAAAGAGAGACAAGAGGTGGAGATTGAGACAGAAAAAGGAGTATGGAAAGTCACATTACTTCCCCACATGAAAAGAACCAGAACATTTGCTAGATTTAGTAAGGGTTGGTCAGAATTTGCTCGACAGAATCGCTTTATGATTGGACAGGTTCTCATTTTTGAAATGATTCGGAGAGGTAATTGTCCCAAGTTCATTGTTTATAAGCAAAGGTAA 1074 0.4134 MSAAPVQSQRRTELSSHTEKTKRIPPLFVSSFSLTPNTVILINPSSKERWVVDIEEEDEDPTELYFKEGWTKFVKENTLETGDFLIFKFDGKLKFEVIICGKSACEKWVETQAKAQAQARTYQNLHSQGHSKQTASTQDRGENGKGKDLIDVEERPSLDVIKIKEERVDSDVYGTISQETCDETWASQSEDEDYDDDDDDDDDDDYDDEEEKEEEEEEEEEEEEEEEEEGDEFDDVKSEPHGSILNIGEDYGNLGSKIPSFSIHLQHAYAKKGCMCMPTDFFHKYMRKERQEVEIETEKGVWKVTLLPHMKRTRTFARFSKGWSEFARQNRFMIGQVLIFEMIRRGNCPKFIVYKQR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4152g00010 357 Gene3D - 248 357 IPR015300 -
Pral4152g00010 357 MobiDBLite consensus disorder prediction 120 140 - -
Pral4152g00010 357 MobiDBLite consensus disorder prediction 1 20 - -
Pral4152g00010 357 Pfam B3 DNA binding domain 15 101 IPR003340 GO:0003677
Pral4152g00010 357 Pfam B3 DNA binding domain 265 353 IPR003340 GO:0003677
Pral4152g00010 357 SUPERFAMILY DNA-binding pseudobarrel domain 14 105 IPR015300 -
Pral4152g00010 357 MobiDBLite consensus disorder prediction 120 152 - -
Pral4152g00010 357 ProSiteProfiles B3 DNA-binding domain profile. 260 357 IPR003340 GO:0003677
Pral4152g00010 357 CDD B3_DNA 259 355 IPR003340 GO:0003677
Pral4152g00010 357 PANTHER B3 DOMAIN-CONTAINING 22 345 - -
Pral4152g00010 357 Gene3D - 9 105 IPR015300 -
Pral4152g00010 357 MobiDBLite consensus disorder prediction 185 234 - -
Pral4152g00010 357 CDD B3_DNA 14 100 IPR003340 GO:0003677
Pral4152g00010 357 SMART B3_2 261 357 IPR003340 GO:0003677
Pral4152g00010 357 SMART B3_2 10 103 IPR003340 GO:0003677
Pral4152g00010 357 Coils Coil 203 232 - -
Pral4152g00010 357 MobiDBLite consensus disorder prediction 173 244 - -
Pral4152g00010 357 SUPERFAMILY DNA-binding pseudobarrel domain 255 352 IPR015300 -
Pral4152g00010 357 ProSiteProfiles B3 DNA-binding domain profile. 7 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4152g00010 Pral-Chr4152 126229 129361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4152g00010 15 106 B3 DNA Binding Superfamily AT4G01580 35.484 6.35e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4152g00010 B3 5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4152g00010 - - pcin:129290266 327.405