Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4152g00009 ATGTCTTCCTTCTTCGGAGTCCTCGTTGGGGAATATGCTTCTAAATTGCGAATACCTCCCCTGTTTGTCTCCAGATTTTCTAGTCTTGCACCAAAAACAGCAACACTTCTTTATTCTTCAAAAAGATTATGGACGGTTGATATTGAGGAAGAAGATAACAAAAAATTGTATTTCAAAAGAGGTTGGAATATATTTGTAGAAGACAATGCTTTAGAAACTGGGGAGTTCATAGTTTTCAAATTTGATGGGGATTCAACATTTAAAGCCAACATCTACGGAAAATCTTACCTCAAAAGAAAATCCTCAATGTCAGTGTCTTCTTTCTTCAAAGTCCTCATCAATGGCGAGTCCACTACTAAATTGAGAATCCCTTTATTGTTTGTCTCCGGATATTCTACTCTGGTCCCAAAAACAGTAACATTTATGAGAGCTTCTTCAAACAGATCATGGAAGGTTGATATTGTGGAAGAAGATGACAAAAGGTTATATTATAAGACTGGCTGGAGTGAATTTGTAGACGATAATGCTTTGGAAATTGCACATTTTTTAGTTTTCAAGTTTGATGGGGATTCAACATTTCGAGTTAAGATCTATGGAAGCTCTGCTTGTGAGAAGGAACTTGAGAATCAGCCATGTATCAATCAGAAATACTGCATACAGTATTATAATAAACAAACAACAACTCTAGATCATCAAGAAAATCTGAAAGGAAGTGATCCCATTGATGTTGATCGACAAAAGTCGAAGCCAAATGTTGAGATAACGGAGGAGAGGGTTGATCATGATGATCGTCATGAAAATTCTAACCAAGAAACAGAGGCTCCGCAGAAAGAAGCTGAAGAACAAAGCGATGAAACTATTGCTGTTCAACCTGAATCTCATTGCCCTCTCAAGAAAACTGGCAACAAGCATGATGGACCCATGCGTAAAGCATCATCTAGTAAAGGCCTCAGTTTGGAGTCTAAGAGG 969 0.3767 MSSFFGVLVGEYASKLRIPPLFVSRFSSLAPKTATLLYSSKRLWTVDIEEEDNKKLYFKRGWNIFVEDNALETGEFIVFKFDGDSTFKANIYGKSYLKRKSSMSVSSFFKVLINGESTTKLRIPLLFVSGYSTLVPKTVTFMRASSNRSWKVDIVEEDDKRLYYKTGWSEFVDDNALEIAHFLVFKFDGDSTFRVKIYGSSACEKELENQPCINQKYCIQYYNKQTTTLDHQENLKGSDPIDVDRQKSKPNVEITEERVDHDDRHENSNQETEAPQKEAEEQSDETIAVQPESHCPLKKTGNKHDGPMRKASSSKGLSLESKR 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4152g00009 323 SUPERFAMILY DNA-binding pseudobarrel domain 102 203 IPR015300 -
Pral4152g00009 323 MobiDBLite consensus disorder prediction 235 284 - -
Pral4152g00009 323 Pfam B3 DNA binding domain 15 91 IPR003340 GO:0003677
Pral4152g00009 323 Pfam B3 DNA binding domain 108 198 IPR003340 GO:0003677
Pral4152g00009 323 PANTHER B3 DOMAIN-CONTAINING 103 280 - -
Pral4152g00009 323 SUPERFAMILY DNA-binding pseudobarrel domain 3 95 IPR015300 -
Pral4152g00009 323 CDD B3_DNA 107 198 IPR003340 GO:0003677
Pral4152g00009 323 CDD B3_DNA 3 92 IPR003340 GO:0003677
Pral4152g00009 323 MobiDBLite consensus disorder prediction 297 323 - -
Pral4152g00009 323 ProSiteProfiles B3 DNA-binding domain profile. 1 95 IPR003340 GO:0003677
Pral4152g00009 323 Gene3D - 1 96 IPR015300 -
Pral4152g00009 323 Gene3D - 100 203 IPR015300 -
Pral4152g00009 323 SMART B3_2 108 201 IPR003340 GO:0003677
Pral4152g00009 323 SMART B3_2 4 95 IPR003340 GO:0003677
Pral4152g00009 323 MobiDBLite consensus disorder prediction 232 323 - -
Pral4152g00009 323 ProSiteProfiles B3 DNA-binding domain profile. 106 201 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4152g00009 Pral-Chr4152 119468 122657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4152g00009 4 99 B3 DNA Binding Superfamily AT5G66980 38.000 3.92e-16 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4152g00009 B3 1.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4152g00009 - - pcin:129291410 451.44