Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4149g00060 ATGAATGTTGATTTACGAGATGCAAAGGATTCTCGTGCTCGTTTCGACAAAGCTGTTCATTCATATGATCAGGCACGAGAAAAATTTGTGTCTTTGAAGAAGAATACACGGGAAGACATTGTTGCTGGAGTAGAAGAGGGTCTTCTGAATTCAAAGTCAGCTTTTGAGAAAAGTCGCTTTAATCTAGTAAACTCACTCATGAACATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCTTTAGTGCAATAATGGATGCCCATCTTAGATACTTCAAGCTGGGTTATGACTTACTGAGCCAAATGGAACCTTATATTCACCAGGTACTAACATATGCACAACAATCTAAAGAGCTGGCTAATGTTGAACAAGATAAGCTTGCAAAACGAATTCAGGAATATAGAACACAAGCTGAGCTGGACAACACACGAGCTTCTAGTAATGCTGATACTTTATTTGGTGCTGACGGCAGCCGTGTTGTTGGGTTGAACTCATACAAGAGCTCTGAAGTAGGGATCCAGTCTGTGCCCCAAGGTGAGTGTCAAACAGTTAAGCAAGGCTATCTGCTAAAACGATCCTCAAGATTGCGTGGAGATTGGAAGCGGAGGTTTTTTGTGCTTGACAACCAAGGGAGTTTATATTACTATAGAGCGAAGGGAGCCAAGGCTATGGGCTCTCAATCATATAATTTTACTAGATCAACTGAACAAAACAGTGGCATGTTTGGGAGATTCCGCTCTAGGCACAACAGGGCAGCATCTCTTAATGAGGAAATTCTAAGTTGCCGTGGGGTTGATCTGTGCACATCAACTATAAAGATGGATGCAGATGATTCAGATCTTCGACTTTGCTTTCGCATAATTTCCCCATCCAAAACATACACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAATAAAATTACTGGAGCTATTACATCACTGTTCAACTCTCAGTTTCTTCAACAGCCTAATCGGGTTGGATTGCATCAAGAAAATGAGAAATCAGCCATCAGTGCTTCATGCAATAGTCAATTGCAGCATAGCCATGGATCTTTGACTGAAGACATATATTCCAATGAAGTGGAGAGTGTGTCTAAAATTTTGTGGGGCATTCCTGGAAATAATAGGTGTGCCGAGTGTTGTGCAACTGAACCGGACTGGGCATCTCTTAACCTGGGAATATTGCTGTGTATTGAATGCTCTGGTGTTCATCGAAATCTTGGAGTTCACATATCAAAGGTGAGATCCATAACATTAGACGTCAAGGTTTGGGAACCTACTGTTCTGGACTTATTCCGGAACTTGGGTAATGCATATTGTAATTCCATATGGGAGGGATTGCTACATGACAATGAAAGGAAAAATGAGTCAAATGCACCAATTAAACCATGCCCCACAGACGCCTTCCAAGAGAAGGAAAAGTACATCCATGCGAAGTACGTGGAGAAGTCACTAATCCATAAAGAGAGTGTACCCGGGAGCCCTTCTTTTGCCCTAAGAATCTGGCAAGCAGTTCAGGCTTTGAACATACGAGAAGTGTATCGCCTCATTGTCACTTCAGATGAAACTCTGGTAAACACCAAATATGATGATGTCGTTCACCATGCTGAGGCAGAAAATTTGGATTTAAGATGTAGCGCAACTGAAAGCCAAGATCCTGATAATCATGTGAGCTATCTCCAAGGTTGTTCACTGTTGCATCTGGCATGTCATTCTGACAGTGACCTAATGGTTGAGTTGTTGCTTCAATTTGGTGCCGATGTAAATGTGCGTGACTCCCATGGAAAGACTCCCTTGCACCATTGCATTTCTAGAGGGAAAAATCCTTTGGCAAAGCTTCTACTTCGAAGGGGTGCAAGACCTTCCATTAAAGATGGTGATGGGTTCACTGCACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGATGAAGAGCTATTTATTTTGCTAGCCGAATCCGCTTAA 1977 0.4213 MNVDLRDAKDSRARFDKAVHSYDQAREKFVSLKKNTREDIVAGVEEGLLNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESFSAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANVEQDKLAKRIQEYRTQAELDNTRASSNADTLFGADGSRVVGLNSYKSSEVGIQSVPQGECQTVKQGYLLKRSSRLRGDWKRRFFVLDNQGSLYYYRAKGAKAMGSQSYNFTRSTEQNSGMFGRFRSRHNRAASLNEEILSCRGVDLCTSTIKMDADDSDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPNRVGLHQENEKSAISASCNSQLQHSHGSLTEDIYSNEVESVSKILWGIPGNNRCAECCATEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTVLDLFRNLGNAYCNSIWEGLLHDNERKNESNAPIKPCPTDAFQEKEKYIHAKYVEKSLIHKESVPGSPSFALRIWQAVQALNIREVYRLIVTSDETLVNTKYDDVVHHAEAENLDLRCSATESQDPDNHVSYLQGCSLLHLACHSDSDLMVELLLQFGADVNVRDSHGKTPLHHCISRGKNPLAKLLLRRGARPSIKDGDGFTALERAMEMGAITDEELFILLAESA 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4149g00060 658 Coils Coil 117 137 - -
Pral4149g00060 658 ProSiteProfiles Ankyrin repeat region circular profile. 598 629 - -
Pral4149g00060 658 ProSiteProfiles Ankyrin repeat region circular profile. 565 596 - -
Pral4149g00060 658 Pfam Putative GTPase activating protein for Arf 369 492 IPR001164 GO:0005096
Pral4149g00060 658 SUPERFAMILY ArfGap/RecO-like zinc finger 366 491 IPR037278 -
Pral4149g00060 658 Gene3D - 178 332 IPR011993 -
Pral4149g00060 658 SMART PH_update 183 318 IPR001849 -
Pral4149g00060 658 Pfam PH domain 184 315 IPR001849 -
Pral4149g00060 658 Gene3D - 506 654 IPR036770 -
Pral4149g00060 658 ProSiteProfiles ARF GTPase-activating proteins domain profile. 366 497 IPR001164 GO:0005096
Pral4149g00060 658 ProSiteProfiles Ankyrin repeat profile. 598 630 IPR002110 GO:0005515
Pral4149g00060 658 CDD PH_ACAP 185 320 - -
Pral4149g00060 658 Pfam BAR domain of APPL family 4 118 IPR004148 GO:0005515|GO:0005737
Pral4149g00060 658 ProSiteProfiles PH domain profile. 182 316 IPR001849 -
Pral4149g00060 658 SUPERFAMILY PH domain-like 175 327 - -
Pral4149g00060 658 Pfam Ankyrin repeats (3 copies) 570 643 IPR002110 GO:0005515
Pral4149g00060 658 ProSiteProfiles Ankyrin repeat profile. 565 597 IPR002110 GO:0005515
Pral4149g00060 658 PANTHER CENTAURIN/ARF 2 656 IPR045258 GO:0005096
Pral4149g00060 658 SUPERFAMILY Ankyrin repeat 551 645 IPR036770 -
Pral4149g00060 658 SMART ANK_2a 598 627 IPR002110 GO:0005515
Pral4149g00060 658 SMART ANK_2a 565 594 IPR002110 GO:0005515
Pral4149g00060 658 Gene3D Arfaptin homology (AH) domain/BAR domain 1 140 IPR027267 -
Pral4149g00060 658 SUPERFAMILY BAR/IMD domain-like 2 205 IPR027267 -
Pral4149g00060 658 SMART arf_gap_3 366 497 IPR001164 GO:0005096
Pral4149g00060 658 CDD ArfGap 370 484 - -
Pral4149g00060 658 Gene3D Arf GTPase activating protein 348 495 IPR038508 -
Pral4149g00060 658 PRINTS HIV Rev interacting protein signature 397 414 IPR001164 GO:0005096
Pral4149g00060 658 PRINTS HIV Rev interacting protein signature 378 397 IPR001164 GO:0005096
Pral4149g00060 658 PRINTS HIV Rev interacting protein signature 420 441 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4149g00060 Pral-Chr4149 343108 361487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4149g00060 376 484 C2H2 Transcription Factor Family AT4G05330 42.727 1.98e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4149g00060 K12489 - gmx:100796006 983.4