Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4149g00057 ATGGCATCGGCCTTTATCAAACTGGATGATTCCCCCATGTTTCAGAAGCAGATATGTTCTCTTGAAGAAACGACTGATGAGTTAGCCGATCGATGCCAGAAACTATACAGAGGGTGCAAGAAATTTATGGCAGCTTTAGGAGAAGCTTATAATGGAGACATTGCCTTTGCTGATGCATTAGAAGTATTTGGTGGGGGGCAGGATGATCCTGTTAGTGTATCAATTGGAGGACCTGTCATATCTAAATTTATTGGTGCACTTCGTGAACTTGCATCTTTTAAAGAGCTTCTCCGGTCACAGGTGGAGCATGTGTTGATCGACCGGTTGGCGCAGTTTATGAATGTTGATTTACGAGATGCAAAGGATTCTCGTGCTCGTTTCGACAAAGCTGTTCATTCATATGATCAGGCACGAGAAAAATTTGTGTCTTTGAAGAAGAATACACGGGAAGACATTGTTGCTGGAGTAGAAGAGGGTCTTCTGAATTCAAAGTCAGCTTTTGAGAAAAGTCGCTTTAATCTAGTAAACTCACTCATGAACATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCTTTAGTGCAATAATGGATGCCCATCTTAGATACTTCAAGCTGGGTTATGACTTACTGAGCCAAATGGAACCTTATATTCACCAGGTACTAACATATGCACAACAATCTAAAGAGCTGGCTAATGTTGAACAAGATAAGCTTGCAAAACGAATTCAGGAATATAGAACACAAGCTGAGCTGGACAACACACGAGCTTCTAGTAATGCTGATACTTTATTTGGTGCTGACGGCAGCCGTGTTGTTGGGTTGAACTCATACAAGAGCTCTGAAGTAGGGATCCAGTCTGTGCCCCAAGGTGAGTGTCAAACAGTTAAGCAAGGCTATCTGCTAAAACGATCCTCAAGATTGCGTGGAGATTGGAAGCGGAGGTTTTTTGTGCTTGACAACCAAGGGAGTTTATATTACTATAGAGCGAAGGGAGCCAAGGCTATGGGCTCTCAATCATATAATTTTACTAGATCAACTGAACAAAACAGTGGCATGTTTGGGAGATTCCGCTCTAGGCACAACAGGGCAGCATCTCTTAATGAGGAAATTCTAAGTTGCCGTGGGGTTGATCTGTGCACATCAACTATAAAGATGGATGCAGATGATTCAGATCTTCGACTTTGCTTTCGCATAATTTCCCCATCCAAAACATACACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAATAAAATTACTGGAGCTATTACATCACTGTTCAACTCTCAGTTTCTTCAACAGCCTAATCGGGTTGGATTGCATCAAGAAAATGAGAAATCAGCCATCAGTGCTTCATGCAATAGTCAATTGCAGCATAGCCATGGATCTTTGACTGAAGACATATATTCCAATGAAGTGGAGAGTGTGTCTAAAATTTTGTGGGGCATTCCTGGAAATAATAGGTGTGCCGAGTGTTGTGCAACTGAACCGGACTGGGCATCTCTTAACCTGGGAATATTGCTGTGTATTGAATGCTCTGGTGTTCATCGAAATCTTGGAGTTCACATATCAAAGGTGAGATCCATAACATTAGACGTCAAGGTTTGGGAACCTACTGTTCTGGACTTATTCCGGAACTTGGGTAATGCATATTGTAATTCCATATGGGAGGGATTGCTACATGACAATGAAAGGAAAAATGAGTCAAATGCACCAATTAAACCATGCCCCACAGACGCCTTCCAAGAGAAGGAAAAGTACATCCATGCGAAGTACGTGGAGAAGTCACTAATCCATAAAGAGAGTGTACCCGGGAGCCCTTCTTTTGCCCTAAGAATCTGGCAAGCAGTTCAGGCTTTGAACATACGAGAAGTGTATCGCCTCATTGTCACTTCAGATGAAACTCTGGTAAACACCAAATATGATGATGTCGTTCACCATGCTGAGGCAGAAAATTTGGATTTAAGATGTAGCGCAACTGAAAGCCAAGATCCTGATAATCATGTGAGCTATCTCCAAGGTTGTTCACTGTTGCATCTGGCATGTCATTCTGACAGTGACCTAATGGTTGAGTTGTTGCTTCAATTTGGTGCCGATGTAAATGTGCGTGACTCCCATGGAAAGACTCCCTTGCACCATTGCATTTCTAGAGGGAAAAATCCTTTGGCAAAGCTTCTACTTCGAAGGGGTGCAAGACCTTCCATTAAAGATGGTGATGGGTTCACTGCACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGATGAAGAGCTATTTATTTTGCTAGCCGAATCCGCTTAA 2313 0.4241 MASAFIKLDDSPMFQKQICSLEETTDELADRCQKLYRGCKKFMAALGEAYNGDIAFADALEVFGGGQDDPVSVSIGGPVISKFIGALRELASFKELLRSQVEHVLIDRLAQFMNVDLRDAKDSRARFDKAVHSYDQAREKFVSLKKNTREDIVAGVEEGLLNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESFSAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANVEQDKLAKRIQEYRTQAELDNTRASSNADTLFGADGSRVVGLNSYKSSEVGIQSVPQGECQTVKQGYLLKRSSRLRGDWKRRFFVLDNQGSLYYYRAKGAKAMGSQSYNFTRSTEQNSGMFGRFRSRHNRAASLNEEILSCRGVDLCTSTIKMDADDSDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPNRVGLHQENEKSAISASCNSQLQHSHGSLTEDIYSNEVESVSKILWGIPGNNRCAECCATEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTVLDLFRNLGNAYCNSIWEGLLHDNERKNESNAPIKPCPTDAFQEKEKYIHAKYVEKSLIHKESVPGSPSFALRIWQAVQALNIREVYRLIVTSDETLVNTKYDDVVHHAEAENLDLRCSATESQDPDNHVSYLQGCSLLHLACHSDSDLMVELLLQFGADVNVRDSHGKTPLHHCISRGKNPLAKLLLRRGARPSIKDGDGFTALERAMEMGAITDEELFILLAESA 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4149g00057 770 Gene3D Arf GTPase activating protein 460 607 IPR038508 -
Pral4149g00057 770 ProSiteProfiles Ankyrin repeat profile. 677 709 IPR002110 GO:0005515
Pral4149g00057 770 Gene3D Arfaptin homology (AH) domain/BAR domain 7 252 IPR027267 -
Pral4149g00057 770 PANTHER CENTAURIN/ARF 4 768 IPR045258 GO:0005096
Pral4149g00057 770 SMART ANK_2a 710 739 IPR002110 GO:0005515
Pral4149g00057 770 SMART ANK_2a 677 706 IPR002110 GO:0005515
Pral4149g00057 770 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Pral4149g00057 770 ProSiteProfiles PH domain profile. 294 428 IPR001849 -
Pral4149g00057 770 Pfam Ankyrin repeats (3 copies) 682 755 IPR002110 GO:0005515
Pral4149g00057 770 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Pral4149g00057 770 SMART arf_gap_3 478 609 IPR001164 GO:0005096
Pral4149g00057 770 SUPERFAMILY ArfGap/RecO-like zinc finger 478 603 IPR037278 -
Pral4149g00057 770 Coils Coil 229 249 - -
Pral4149g00057 770 CDD PH_ACAP 297 432 - -
Pral4149g00057 770 Gene3D - 290 444 IPR011993 -
Pral4149g00057 770 Pfam PH domain 296 427 IPR001849 -
Pral4149g00057 770 PRINTS HIV Rev interacting protein signature 509 526 IPR001164 GO:0005096
Pral4149g00057 770 PRINTS HIV Rev interacting protein signature 490 509 IPR001164 GO:0005096
Pral4149g00057 770 PRINTS HIV Rev interacting protein signature 532 553 IPR001164 GO:0005096
Pral4149g00057 770 SUPERFAMILY BAR/IMD domain-like 8 317 IPR027267 -
Pral4149g00057 770 ProSiteProfiles Ankyrin repeat region circular profile. 710 741 - -
Pral4149g00057 770 SMART PH_update 295 430 IPR001849 -
Pral4149g00057 770 ProSiteProfiles Ankyrin repeat region circular profile. 677 708 - -
Pral4149g00057 770 CDD BAR_SFC_plant 16 217 IPR035670 -
Pral4149g00057 770 ProSiteProfiles Ankyrin repeat profile. 710 742 IPR002110 GO:0005515
Pral4149g00057 770 SUPERFAMILY PH domain-like 287 439 - -
Pral4149g00057 770 CDD ArfGap 482 596 - -
Pral4149g00057 770 Gene3D - 618 766 IPR036770 -
Pral4149g00057 770 Pfam Putative GTPase activating protein for Arf 481 604 IPR001164 GO:0005096
Pral4149g00057 770 SUPERFAMILY Ankyrin repeat 663 757 IPR036770 -
Pral4149g00057 770 ProSiteProfiles ARF GTPase-activating proteins domain profile. 478 609 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4149g00057 Pral-Chr4149 342608 361487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4149g00057 488 596 C2H2 Transcription Factor Family AT4G05330 42.727 2.59e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4149g00057 K12489 - gmx:100796006 1177.16