Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4149g00053 ATGTCTGATACCATCAGAGAGAAGTCTAATATAATGGATCAGGAGTCATGGGAGGCTGGTTTTCACCAACATCTGGATATGGGTGGTGTTCAAGATTTCCACGACCAAGATTATTGTCACACGATGATGAATTTTGACGAGGAAGATAAAGAGCTCCTCAGGAACTTTACGCATCAAACAGGTCTACATTCGTCAGATTTAGATCCTCTGTGGTCGGAAACTGTATTATCTGCTCAAAGAGAAACAGAAACTAACGGCATCACTTCCGGCGACCAAGTGATGATGCCTCCTAGGGCATGCGTCCTGTCATTTGATAACTACAACGTGATACCAATAATCTCAAAACAAGAAGACTCCAATAAGAAACGTTTTTCGTCAAAAAGAATCAGCAGAGCGAGCCATAAGGCCGAACCAAGTGCTAAGAAGAAAAGAAGGTCTTCGGAGACCGTAATGGATCATGTAACTGCAGAGCGGATAAGAAGACGCCAAATTACAGAGGGCTTCGCAGCACTGTCTGCAACTATTCCGGGCTTGAAGAAGTTAGACAAAATGACTATACTTGAGGAAGCTATCAAATACGTGAAACAACTTCAAGAACGTGTGACAAAACTAGAAAAAGTGACTCCAGTAATATCCATAAAGAAAATTGAGGTTGGCGAAAATGACGATTTCCGTGAGGCCGATGAAGTGCTTCCAAAGATTGAAGTAAGAGTTACGGATAATCAAGTGCTTCTTGGAATCCATTGTGTGAAACAAAAGGGCATTCAGTTCAAAATATTGAGCCTGCTTCAGAATTTCAATCTCTGTGTCACAAGTAGTAGCGTTTTACCATTTGGAAATTCCATTCTAGGCATTACCATTATTGCTCAGATGGGTGATGCACACAGGATACCAGTGAATGATGTGGTGAAAAACCTGCGACAAATTCTATTAAAGTCGCATGAGGTTGATCCGTAG 957 0.4159 MSDTIREKSNIMDQESWEAGFHQHLDMGGVQDFHDQDYCHTMMNFDEEDKELLRNFTHQTGLHSSDLDPLWSETVLSAQRETETNGITSGDQVMMPPRACVLSFDNYNVIPIISKQEDSNKKRFSSKRISRASHKAEPSAKKKRRSSETVMDHVTAERIRRRQITEGFAALSATIPGLKKLDKMTILEEAIKYVKQLQERVTKLEKVTPVISIKKIEVGENDDFREADEVLPKIEVRVTDNQVLLGIHCVKQKGIQFKILSLLQNFNLCVTSSSVLPFGNSILGITIIAQMGDAHRIPVNDVVKNLRQILLKSHEVDP 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4149g00053 318 SMART finulus 154 203 IPR011598 GO:0046983
Pral4149g00053 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 209 IPR036638 GO:0046983
Pral4149g00053 318 PANTHER BHLH TRANSCRIPTION FACTOR 60 312 - -
Pral4149g00053 318 Pfam Helix-loop-helix DNA-binding domain 153 198 IPR011598 GO:0046983
Pral4149g00053 318 MobiDBLite consensus disorder prediction 121 152 - -
Pral4149g00053 318 Coils Coil 187 207 - -
Pral4149g00053 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Pral4149g00053 318 Gene3D - 139 213 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4149g00053 Pral-Chr4149 307840 309299 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4149g00053 144 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 42.564 2.31e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4149g00053 HLH 4.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4149g00053 - - pcin:129287632 275.789