Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4149g00052 ATGGATGATGGTGAAGATTTCCACGACCAATACAATAATATGATGATGTCCTTTGATGAGGAAGACCAAGAGTTTCTGAGAGACATTATGCAGCAACAACCAGGTCTTCGTAACTATCCGTCTTCTCAAACAGAAACAGAAAATAGCGGCAGTTCAGGCGGCAACAATGGTTCCAAAGATGAAAGCCGCATGATGTCTCCTAGGTCGTACATTCTGTCCTTTGGCAACTCTGACATAAAACCCATAAATTCAAACCAAGAAGAATCTAATGACCATCGTTCGTCAAAAATAACCAGAAACGTTGATCCGAGAAAGGTAAAAAGAAAGCGTTCGGATACCTTCGATCATATAATGGCAGAGAGGAGGAGGAGACAACGAATTACTGATAAGTTCATCGCACTTTCTGCAACAATTCCGGGGTTGAAGAAGTTGGACAAAGCCACCATACTGGACGAAGCTATCAAATGCGTGAAACAACTTCAGGAACGAGTAAGAGAACTAGAGAAAGAGTTGTCAGTGATATCCATAAAGAAAATTGAGGTTTGTGAGAATGATGAGTTCTGCGAAACCAATGAAGTGCTGCCTATGATTGAAGTAAGAGTTTCAGATAACCAAGTGCTTCTGGGAATCCATTGCGAGAAACAAAATGGCATTGAATTCAAAATATTGAGCTTGCTTGAGACTTTTCATCTCTGTGTCTCCAGTAGTAGCATCTTACCATTTGGAGATTCCTCTCTTGGCATTACCATTGTTGCAAGGGTGGGTGATGAATCCAGGATGAGGGTGAATGATGTGGTGAAAAAACTGCGACAAATTCTATCAAAATTGCCCGAGGATGATGATTGCTCCTACTAG 855 0.4129 MDDGEDFHDQYNNMMMSFDEEDQEFLRDIMQQQPGLRNYPSSQTETENSGSSGGNNGSKDESRMMSPRSYILSFGNSDIKPINSNQEESNDHRSSKITRNVDPRKVKRKRSDTFDHIMAERRRRQRITDKFIALSATIPGLKKLDKATILDEAIKCVKQLQERVRELEKELSVISIKKIEVCENDEFCETNEVLPMIEVRVSDNQVLLGIHCEKQNGIEFKILSLLETFHLCVSSSSILPFGDSSLGITIVARVGDESRMRVNDVVKKLRQILSKLPEDDDCSY 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4149g00052 284 MobiDBLite consensus disorder prediction 34 84 - -
Pral4149g00052 284 Pfam Helix-loop-helix DNA-binding domain 116 161 IPR011598 GO:0046983
Pral4149g00052 284 MobiDBLite consensus disorder prediction 85 110 - -
Pral4149g00052 284 Gene3D - 100 175 IPR036638 GO:0046983
Pral4149g00052 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 160 IPR011598 GO:0046983
Pral4149g00052 284 Coils Coil 150 177 - -
Pral4149g00052 284 MobiDBLite consensus disorder prediction 20 110 - -
Pral4149g00052 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 175 IPR036638 GO:0046983
Pral4149g00052 284 PANTHER BHLH TRANSCRIPTION FACTOR 16 274 - -
Pral4149g00052 284 SMART finulus 117 166 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4149g00052 Pral-Chr4149 275602 276670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4149g00052 71 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 38.115 2.94e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4149g00052 HLH 8.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4149g00052 - - pcin:129287632 293.893