Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4149g00048 ATGCTATCTGCTGATATGGCGGCATCTTCTTCGTCGGCGTCGCTGCTCGGAATAAGAGGAGATCAGAATCCGATGAATCAGCAGCAGCATTCATCAACCCCAACTTCGTCAACAACCGCAGCTGCACCACCCCAGAAGAAGAGGAGAAACCAGCCAGGAACACCAAATCCAGATGCGGAGGTGATAGCTCTATCTCCAAAGACATTAATGGCGACAAACAGGTTCATTTGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACCTACAACTCCACAGAAGAGGACACAACCTGCCTTGGAAACTAAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCGGAGCCCACATGCGTGCACCATGACCCCTCCAGAGCTCTGGGTGACCTCACTGGCATTAAGAAACACTATTCTCGCAAACATGGCGAGAAGAAATGGAAGTGCGAGAAGTGTTCGAAGAAATACGCGGTTCAGTCTGATTGGAAAGCACATTCCAAGACCTGTGGCACCAGAGAATACAGGTGCGACTGTGGAACTCTCTTCTCCAGGCGAGACAGTTTTATCACCCACAGGGCGTTTTGCGATGCACTGGCTCAGGAAAGTGCGAGACAACCTTCCAGCTTGATTAGCAGCGCCATTAGTGGGAGCCAGCTCTATGGAAGTAACAATATGGCGGCTTTAGGCTTATCTCAGGTGGCCTCCCACATCTCCGCCGTCCATGACCACCACCCCAACAACCAAACCGGCAGCGACATTTTGCGACTGGGTGGCGCAGCTGCCACTGCCGCTCGGGCTGGCCATTTTGACCACCTTCTTCCACCATCCTTAATTAGACCACCACCGCCACCGCAGATGGCGGCCAATGTTGCTTCTCCTCCGGCCTTCTTCATGGCGGATCAATCAAACCAGAACTATCACAACCACCATGATCACCATCATCATGGATTCATGCAATTCTCTGATCTTCATCACAACAATAGCAACAATTCTCCAACATCTGCACCTAATAACAACAACCTCTTCACCCTTCCTCCATTCCTCTCCAACACCACCAACAATAACAGTTCTTTATCCGAACACTTGGGCAATAACGGAAGCGCCGGCGGAGGAGGAAACGTAGACGGCCCCACCACCTTCTTCTCCGACCAAATCACAAGCTCCAGTGCTCCTTCTCTTTTCAGCACATCTCTTCAGAACAACAGTAACAGCAGCAGTATACCCCACATGTCTGCAACAGCACTGCTTCAAAAGGCTGCTCAAATCGGTGCGAGTACTAGCAACAACAGCACCACAGCCTCGCTTCTCAGAAGCTTCGGAAGCTCCTCCTCCACCACCACTGGATCCAAGTCTGACCACCACCACCACCACAACAGGCCGCCGCAGCAGCTGGTCGGAGCAAACTATGGCGCTATTTTTGGAGGGTCGTCGTCGTCGACGAACAACGAGGATCATCAGACCAGTAATCTTCAGGACTTGATGAACGCATTCAGTAGTGTTGGTGGGTATGAAGGATATGATCATCATCATCATCACCAGCATCAACAAAACAACTCAAACACAAGAGACCTGAAACTTCCCGTAGGATCTGACAGGCTTACTCGAGATTTTCTTGGGGTTGGGCAGATTGTGAGGAGCATGAGCGGAGGAATTTCACCCAGAGATCATCATCAACAAGGGTTCATGAACTTGGGTTCTTTGGAGAGTCACCGAAACAACAACAACAACAACAATAATGCTGCGCCGTCAGGCCATTCTTTTGGAGGAGGAGGGAATTTTCAGTGA 1797 0.5019 MLSADMAASSSSASLLGIRGDQNPMNQQQHSSTPTSSTTAAAPPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPSSLISSAISGSQLYGSNNMAALGLSQVASHISAVHDHHPNNQTGSDILRLGGAAATAARAGHFDHLLPPSLIRPPPPPQMAANVASPPAFFMADQSNQNYHNHHDHHHHGFMQFSDLHHNNSNNSPTSAPNNNNLFTLPPFLSNTTNNNSSLSEHLGNNGSAGGGGNVDGPTTFFSDQITSSSAPSLFSTSLQNNSNSSSIPHMSATALLQKAAQIGASTSNNSTTASLLRSFGSSSSTTTGSKSDHHHHHNRPPQQLVGANYGAIFGGSSSSTNNEDHQTSNLQDLMNAFSSVGGYEGYDHHHHHQHQQNNSNTRDLKLPVGSDRLTRDFLGVGQIVRSMSGGISPRDHHQQGFMNLGSLESHRNNNNNNNNAAPSGHSFGGGGNFQ 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4149g00048 598 Gene3D Classic Zinc Finger 129 208 - -
Pral4149g00048 598 MobiDBLite consensus disorder prediction 508 522 - -
Pral4149g00048 598 MobiDBLite consensus disorder prediction 1 52 - -
Pral4149g00048 598 Gene3D Classic Zinc Finger 54 123 - -
Pral4149g00048 598 MobiDBLite consensus disorder prediction 569 598 - -
Pral4149g00048 598 MobiDBLite consensus disorder prediction 323 386 - -
Pral4149g00048 598 MobiDBLite consensus disorder prediction 430 490 - -
Pral4149g00048 598 MobiDBLite consensus disorder prediction 505 529 - -
Pral4149g00048 598 MobiDBLite consensus disorder prediction 569 589 - -
Pral4149g00048 598 MobiDBLite consensus disorder prediction 476 490 - -
Pral4149g00048 598 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Pral4149g00048 598 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Pral4149g00048 598 SMART c2h2final6 116 146 IPR013087 -
Pral4149g00048 598 SMART c2h2final6 75 97 IPR013087 -
Pral4149g00048 598 SMART c2h2final6 151 171 IPR013087 -
Pral4149g00048 598 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Pral4149g00048 598 MobiDBLite consensus disorder prediction 430 452 - -
Pral4149g00048 598 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Pral4149g00048 598 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 564 IPR031140 -
Pral4149g00048 598 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Pral4149g00048 598 MobiDBLite consensus disorder prediction 1 60 - -
Pral4149g00048 598 MobiDBLite consensus disorder prediction 325 370 - -
Pral4149g00048 598 FunFam protein indeterminate-domain 12-like 54 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4149g00048 Pral-Chr4149 265374 271475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4149g00048 70 551 C2H2 Transcription Factor Family AT2G02080 45.344 3.96e-115 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4149g00048 zf-C2H2_jaz 3.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4149g00048 K25870 - gmx:100786121 550.051