Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4149g00047 ATGCTATCTGCTGATATGGCGGCATCTTCTTCGTCGGCGTCGCTGCTCGGAATAAGAGGAGATCAGAATCCGATGAATCAGCAGCAGCATTCATCAACCCCAACTTCGTCAACAACCGCAGCTGCACCACCCCAGAAGAAGAGGAGAAACCAGCCAGGAACACCAAATCCAGATGCGGAGGTGATAGCTCTATCTCCAAAGACATTAATGGCGACAAACAGGTTCATTTGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACCTACAACTCCACAGAAGAGGACACAACCTGCCTTGGAAACTAAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCGGAGCCCACATGCGTGCACCATGACCCCTCCAGAGCTCTGGGTGACCTCACTGGCATTAAGAAACACTATTCTCGCAAACATGGCGAGAAGAAATGGAAGTGCGAGAAGTGTTCGAAGAAATACGCGGTTCAGTCTGATTGGAAAGCACATTCCAAGACCTGTGGCACCAGAGAATACAGGCGAGACAGTTTTATCACCCACAGGGCGTTTTGCGATGCACTGGCTCAGGAAAGTGCGAGACAACCTTCCAGCTTGATTAGCAGCGCCATTAGTGGGAGCCAGCTCTATGGAAGTAACAATATGGCGGCTTTAGGCTTATCTCAGGTGGCCTCCCACATCTCCGCCGTCCATGACCACCACCCCAACAACCAAACCGGCAGCGACATTTTGCGACTGGGTGGCGCAGCTGCCACTGCCGCTCGGGCTGGCCATTTTGACCACCTTCTTCCACCATCCTTAATTAGACCACCACCGCCACCGCAGATGGCGGCCAATGTTGCTTCTCCTCCGGCCTTCTTCATGGCGGATCAATCAAACCAGAACTATCACAACCACCATGATCACCATCATCATGGATTCATGCAATTCTCTGATCTTCATCACAACAATAGCAACAATTCTCCAACATCTGCACCTAATAACAACAACCTCTTCACCCTTCCTCCATTCCTCTCCAACACCACCAACAATAACAGTTCTTTATCCGAACACTTGGGCAATAACGGAAGCGCCGGCGGAGGAGGAAACGTAGACGGCCCCACCACCTTCTTCTCCGACCAAATCACAAGCTCCAGTGCTCCTTCTCTTTTCAGCACATCTCTTCAGAACAACAGTAACAGCAGCAGTATACCCCACATGTCTGCAACAGCACTGCTTCAAAAGGCTGCTCAAATCGGTGCGAGTACTAGCAACAACAGCACCACAGCCTCGCTTCTCAGAAGCTTCGGAAGCTCCTCCTCCACCACCACTGGATCCAAGTCTGACCACCACCACCACCACAACAGGCCGCCGCAGCAGCTGGTCGGAGCAAACTATGGCGCTATTTTTGGAGGGTCGTCGTCGTCGACGAACAACGAGGATCATCAGACCAGTAATCTTCAGGACTTGATGAACGCATTCAGTAGTGTTGGTGGGTATGAAGGATATGATCATCATCATCATCACCAGCATCAACAAAACAACTCAAACACAAGAGACCTGAAACTTCCCGTAGGATCTGACAGGCTTACTCGAGATTTTCTTGGGGTTGGGCAGATTGTGAGGAGCATGAGCGGAGGAATTTCACCCAGAGATCATCATCAACAAGGGTTCATGAACTTGGGTTCTTTGGAGAGTCACCGAAACAACAACAACAACAACAATAATGCTGCGCCGTCAGGCCATTCTTTTGGAGGAGGAGGGAATTTTCAGTGA 1770 0.5011 MLSADMAASSSSASLLGIRGDQNPMNQQQHSSTPTSSTTAAAPPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRRDSFITHRAFCDALAQESARQPSSLISSAISGSQLYGSNNMAALGLSQVASHISAVHDHHPNNQTGSDILRLGGAAATAARAGHFDHLLPPSLIRPPPPPQMAANVASPPAFFMADQSNQNYHNHHDHHHHGFMQFSDLHHNNSNNSPTSAPNNNNLFTLPPFLSNTTNNNSSLSEHLGNNGSAGGGGNVDGPTTFFSDQITSSSAPSLFSTSLQNNSNSSSIPHMSATALLQKAAQIGASTSNNSTTASLLRSFGSSSSTTTGSKSDHHHHHNRPPQQLVGANYGAIFGGSSSSTNNEDHQTSNLQDLMNAFSSVGGYEGYDHHHHHQHQQNNSNTRDLKLPVGSDRLTRDFLGVGQIVRSMSGGISPRDHHQQGFMNLGSLESHRNNNNNNNNAAPSGHSFGGGGNFQ 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4149g00047 589 MobiDBLite consensus disorder prediction 497 519 - -
Pral4149g00047 589 MobiDBLite consensus disorder prediction 1 52 - -
Pral4149g00047 589 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Pral4149g00047 589 MobiDBLite consensus disorder prediction 467 481 - -
Pral4149g00047 589 MobiDBLite consensus disorder prediction 499 513 - -
Pral4149g00047 589 MobiDBLite consensus disorder prediction 421 443 - -
Pral4149g00047 589 MobiDBLite consensus disorder prediction 560 589 - -
Pral4149g00047 589 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Pral4149g00047 589 MobiDBLite consensus disorder prediction 560 580 - -
Pral4149g00047 589 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Pral4149g00047 589 SMART c2h2final6 116 146 IPR013087 -
Pral4149g00047 589 SMART c2h2final6 75 97 IPR013087 -
Pral4149g00047 589 SMART c2h2final6 151 171 IPR013087 -
Pral4149g00047 589 FunFam protein indeterminate-domain 12-like 54 122 - -
Pral4149g00047 589 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Pral4149g00047 589 Gene3D Classic Zinc Finger 72 172 - -
Pral4149g00047 589 MobiDBLite consensus disorder prediction 316 361 - -
Pral4149g00047 589 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 555 IPR031140 -
Pral4149g00047 589 MobiDBLite consensus disorder prediction 1 60 - -
Pral4149g00047 589 MobiDBLite consensus disorder prediction 314 377 - -
Pral4149g00047 589 MobiDBLite consensus disorder prediction 421 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4149g00047 Pral-Chr4149 265366 271475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4149g00047 70 542 C2H2 Transcription Factor Family AT2G02080 43.725 3.23e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4149g00047 zf-C2H2_jaz 3.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4149g00047 K25870 - gmx:100786121 521.546