Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4149g00008 ATGGACCTCGATATATGCCGCTGGATACTAGAGTTTCTCCTCATGAGTCCCGTTCCAGATTCAATCGTCAAGAATGTTTGGAATGCTTTGCCTGTCTCTGGTATCAGTTCGCGCCTGTGGAAAATATTGGCTCTCAGGGCTATTCAATCGGAGGTGGATACGGAATCTTTTACAGAAAACTCATTGGAATGTCTAGAGGTCATTGAAGAAATCGACAGGCTTGATGGCATTGCAATCGCAGAAGCAATGAAGGAGGCATATTGTGCGGTTGCCGTGGAGTGCAGTATCAGGTACCTTGAGTCATGCCCAGATAAGAACTCCCGCGGCTTGTTTGACGATGCTATTAATAGGATTTGGAGGGGCCGAGTTCGGAAAATGATTGAGGCGATGGCGCTGGGAAAGAGGAGTCACTTGTTTACGGCAGAGTTGATAGAGTGGAAGGACGTCATAGAGTCTGCACGTTGGGATGCAGAGGCGTGCGGGAGGTTAATGAACATGAATACCAGACAAAATGCACTCGATAAAGCTAGGGTGTATCTTAAAGAAACTTGGACATCCATGGGCCCTTCTTTCCTTGAGTTAGTAGCTAATTTGTCTAAAGACAAGGGCTTGGAAAATTCAAGGGGGGATAAGATGCGTGACGCAGAGCTTGCTGCTAGTATACCCAATGAAGGTTGTAACAAGGGTGTTTCTGAATCTGTCGTGGTCTCTGATCAGATGAATATGTGCGAAGGAAGGTTACATTGTTCAACTAACACGACTGAGGAGGGTTTAGTTGTGTCTGGTGGAAATGGATTGGATAACTCTGCAATCTGCATGGAGAAGGCACCAGTGGCAGGTGAGAATCAAGATAGTGAGCAATTGGGGAATAGAGTTGTGTCTTCTGTTGGCGGAAATCAGGCATTGGGTGGGACTGACTTGCCTCAAAGGGCGGATGGAGCAATTCAAGAGGGCAACCTGCCACTTGAACATAATCGTGCTGCTCCCTCTACACGGAAAGGAGTTAAAATTATTGATGCTGAGAATGCAGGGCCAGCGACAGCTTGTAGCAAAGATCATAATCCATCTAATATTCAGGTTGAAAAACTTCGGAAATCTCTCATGTCAAGTTCTTCGGAGTTGCAAGCATTGGTGAAGGATCCTCTTCCTGATGCATTACATAAATCTGACATTGTGAGATCTGAATTAGCAACAAAGGGTGTGAATCATGAGCCTCCTTTTGAAAACCAGAGTACAGTTGTAAATGTACCAGAGCAAAATACTTGCAGGAGCTTGGTGCTTTATCAACCTATCAATGATATTTTAAAGAAATTGTCTTCTGCTAATCGCAGTAATGTTCGACGTCCCAGCTGGATGGAACGAAATAGTACTGCCCATACTTATGAGTGTTTCTCTTTTCAGTGGGATGATCCATTTAATGACTTGCCTGAGGGAAGCTCTAAGAAAAGGAAGAGAAAAGTAAGATGGAGTTCCGAAGAAGAGGATGCATTAAGGGCTGGTGTAAAGAAGTTTGGCAAAGGAAACTGGAAGCCAATCCTAAGGTTTTACAGTGAGATATTTACAAAGACGGGAAGAACAGAAGTTGATTTGAAGGATAAATGGAGAAATTTGACACGGTGGTCATAG 1626 0.4428 MDLDICRWILEFLLMSPVPDSIVKNVWNALPVSGISSRLWKILALRAIQSEVDTESFTENSLECLEVIEEIDRLDGIAIAEAMKEAYCAVAVECSIRYLESCPDKNSRGLFDDAINRIWRGRVRKMIEAMALGKRSHLFTAELIEWKDVIESARWDAEACGRLMNMNTRQNALDKARVYLKETWTSMGPSFLELVANLSKDKGLENSRGDKMRDAELAASIPNEGCNKGVSESVVVSDQMNMCEGRLHCSTNTTEEGLVVSGGNGLDNSAICMEKAPVAGENQDSEQLGNRVVSSVGGNQALGGTDLPQRADGAIQEGNLPLEHNRAAPSTRKGVKIIDAENAGPATACSKDHNPSNIQVEKLRKSLMSSSSELQALVKDPLPDALHKSDIVRSELATKGVNHEPPFENQSTVVNVPEQNTCRSLVLYQPINDILKKLSSANRSNVRRPSWMERNSTAHTYECFSFQWDDPFNDLPEGSSKKRKRKVRWSSEEEDALRAGVKKFGKGNWKPILRFYSEIFTKTGRTEVDLKDKWRNLTRWS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4149g00008 541 SUPERFAMILY Homeodomain-like 483 539 IPR009057 -
Pral4149g00008 541 ProSiteProfiles Myb-like domain profile. 481 538 IPR001005 -
Pral4149g00008 541 Gene3D - 478 540 - -
Pral4149g00008 541 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 481 541 IPR017930 -
Pral4149g00008 541 Pfam Myb-like DNA-binding domain 486 537 IPR001005 -
Pral4149g00008 541 CDD SANT_TRF 487 539 - -
Pral4149g00008 541 SMART sant 485 540 IPR001005 -
Pral4149g00008 541 PANTHER MYB TRANSCRIPTION FACTOR 1 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4149g00008 Pral-Chr4149 73208 76988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4149g00008 489 537 Single Myb Histone (SMH) Gene Family AT1G15720 59.184 3.53e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pral4149g00008 Myb_DNA-binding 5.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4149g00008 - - pcin:129285243 763.837