Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4149g00006 ATGTCTGCTGCTTCCTCGTCTTCACCGTTCTTCGGAATCACAGAAGAAAACCCAATTCAGATGACACAACAGCAGCAGCAACATCATCAATCCTCCACGGCTGCTTCCTCGACTGCTCCAAACACAGCAGTGCCTCAGAAGAAAAGAAGGAATCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCTCTATCTCCCAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACCTACAACTCCACAGAAGAGGACACAACCTACCATGGAAGCTGAAGCAGAAGACTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCAGAGCCCACATGCGTCCACCATGACCCTTCAAGAGCTCTGGGTGACCTCACTGGCATTAAGAAGCACTATTCTCGCAAACATGGCGAGAAGAAATGGAAGTGCGAGAAGTGTTCCAAGAAATACGCTGTTCAATCTGATTGGAAAGCACATTCCAAGACTTGTGGTACCAGAGAATACAGATGCGACTGTGGCACTCTCTTCTCCAGACGTGACAGTTTTATCACTCACAGAGCCTTCTGTGATGCCCTAGCTCAGGAGAGTGCGAGGAACCCTGCAAGCTTAAACCCTATAGGCACTCATCTTTATGGGACAAACCACCACATGAGCTTAGGCCTATCTCATCATCAGCAAGTTGCTGGTTCTTCAATGTCCCATCATCATCTTCATCATCAAAACCTCCACGCTGCTGCTGCTTCTGCAACAAACCCTAATAATACCAGTATCTTGCGTCTAAGCAATGCCAATGCAGCAAAATTTGAGCCCACCGGCTTAATCTCACCCTCCTCATCAAACCCATCAATGCCCAATAATTCCTCAGCTTTTTTCACCACAGATCCGATCCCTAACCAAGGATTTCAGCAGCAAGCAGCATTCTCGTCTTCCGGCAAGGCTTCCTCTATACATGGCCTCATGCAGCTTCCTGATCTTCAAGGAAACCCTAGTAATAACAACAGTTCGTCGAATCCTTTTAATCTAGGGTTCTTCCCTAATAACAGTATGATCGCTGATCAGTTCAATAACCCTATTGGTGATCATCATCACCATGTCGGGTCAGCTGGTTTAGCTTCCTCAGTGCTCTTTAGCAACTCAATCCAACACGACGACGTTTCTCCAGCGGCGGCGCATATGTCTGCGACTGCATTGCTTCAGAAAGCTGCTCAAATGGGCTCGACCACAACAACGTCAAATAATAGTTCTTCCTCGTTACTTCGAGGAATGGGTGGTTCAACAACCAATAATAATAATGGTGCTAAATCGGATAATCTTGTCACTTTTGGAAGTGACAGTACAGCAGAAAACGACCACCACCACCACCACCATCTTCGAGGGTTGATGAACTCTCTTGCTAATGGGAATCCTTCTATATTCGGAAATGTGCAAGCAGGGAACGATCAGGCTAATAGTCTGCAACAGAATCTGGGTGTGAGCTTTGGAGGTTCTGATAAATTAACGTTAGACTTTTTGGGTGTCGGAGGAATGGTGAGAAACATGAATGGTGGGTTTTCACAGAGAGAACCTCAACAACATGGCAGCATGAACATGAGTTCTTTGGAACCAGCAGCTGGACAGGCAAGCCAAAGTTTCAGAAGCACGACGCTGCAATGA 1686 0.4638 MSAASSSSPFFGITEENPIQMTQQQQQHHQSSTAASSTAPNTAVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPASLNPIGTHLYGTNHHMSLGLSHHQQVAGSSMSHHHLHHQNLHAAAASATNPNNTSILRLSNANAAKFEPTGLISPSSSNPSMPNNSSAFFTTDPIPNQGFQQQAAFSSSGKASSIHGLMQLPDLQGNPSNNNSSSNPFNLGFFPNNSMIADQFNNPIGDHHHHVGSAGLASSVLFSNSIQHDDVSPAAAHMSATALLQKAAQMGSTTTTSNNSSSSLLRGMGGSTTNNNNGAKSDNLVTFGSDSTAENDHHHHHHLRGLMNSLANGNPSIFGNVQAGNDQANSLQQNLGVSFGGSDKLTLDFLGVGGMVRNMNGGFSQREPQQHGSMNMSSLEPAAGQASQSFRSTTLQ 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4149g00006 561 Gene3D Classic Zinc Finger 55 124 - -
Pral4149g00006 561 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Pral4149g00006 561 Gene3D Classic Zinc Finger 130 209 - -
Pral4149g00006 561 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Pral4149g00006 561 MobiDBLite consensus disorder prediction 1 61 - -
Pral4149g00006 561 SMART c2h2final6 117 147 IPR013087 -
Pral4149g00006 561 SMART c2h2final6 76 98 IPR013087 -
Pral4149g00006 561 SMART c2h2final6 152 172 IPR013087 -
Pral4149g00006 561 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Pral4149g00006 561 MobiDBLite consensus disorder prediction 416 467 - -
Pral4149g00006 561 MobiDBLite consensus disorder prediction 1 53 - -
Pral4149g00006 561 MobiDBLite consensus disorder prediction 416 456 - -
Pral4149g00006 561 FunFam protein indeterminate-domain 12-like 55 123 - -
Pral4149g00006 561 MobiDBLite consensus disorder prediction 528 561 - -
Pral4149g00006 561 Pfam Zinc-finger double-stranded RNA-binding 76 98 IPR022755 -
Pral4149g00006 561 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 534 IPR031140 -
Pral4149g00006 561 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4149g00006 Pral-Chr4149 43865 48637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4149g00006 71 525 C2H2 Transcription Factor Family AT2G02080 50.213 1.82e-124 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4149g00006 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4149g00006 K25870 - tcc:18609936 560.066