Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4147g00009 ATGGATGAGGGAAAGCGTAAATCTAGGAAGGAAGATTATGAAGGGAAGGAAGAGGATTCCAAGAGGAGTCGCCGTGAACGGGACCGTGAGAAGACTAGTGATAAAGGCAAGGACAGACGTGAAGGAAGGCATAGGGATAGTGAGAAGAGGGATCGTGAGAGCCGACGTTATGAGAGAGAGAAAAGCAGTGATTCTGATGAAAGATTTGATAGAGAAAGAGAGAAGCATAGAGATAAGGATAAGGATAGGATGCGAGCTCATGATGAAGAAAGAGAAAGAGCTCGGGACAAGAAAAGGGAAAGAGAGAGGGAAGATAGGGAAAGGGAGAGGAGAGAAAGGAGGGAGAAAGAAAGGGAGAAGGATAGAGAAAGGGAACGGGATAGGAGAGAGCATGAAAGGGAGAGGGAAATTGAAAAAGAAAGGGGGAGGAGAGGAAGAGAAAGGGCGAAGCGTAGGGAAGTTGATAGTGAGTATAGTGATGATGATTCCAGGGATAGAGAAAGAAAGCGGAACAAGAAAGATAATGATGACTACAAGGGCAAAGAGCAAGACAAGAATGTCAACAAGTCAAGCAGGCAAGCCGAGAATAATGAGGAAAGCCCAAGGAAAAAGAGTGGCAATGATAACTCAGATGCCAATGAAAGCAAACCAAGCCGTGAGGAGGAGTTAGAGGATGAACATAAGAAATTGGATGAAGAGATGGAAAAGAGGAGAAGGAGAGTTCAGGAATGGCAAGAGTTGAGGAGGAAAAGAGAGGAAGCTGAGAGAGAAAAACATGGTGAAGCAAGTGCTGATGTACCCAAGTCTGGAAAGGCCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACCATAACAGGGAAGCCAAATACAGCTATGGATGTAGATGAAGATGACAAGCTTTCAGATAAAGAACCTAAGGATTCGATGGTAATAGATGTTAGTAACGGACCTGTTACATCTAATTTACCGGATGAAGTTAATGGCTCTCATGCAGATGAGGAAATTGATCCGTTGGATGCTTTCATGAGTTCTATGGTTTTGCCTGAAGTTGAAAAGCTGAATAGTGCTATGGCTCCTGAGTCTTCTAATCAAATTGCTGACTTAAAGCCCAAGGGTAACAAGGATGAGCAAAGTAATGGGGGGAACCCTAGGAAAGGTTCAAATAAATCAATTGGGAGAATAATTCCTGGTGAAGAGTCTGATTCAGATTATGAAGACCTTGAAACTGAGGGTGATCCATTAGATGAAGATGATGATGAATTCATGAAAAGAGTAAAGAAGACGAAAGCTGAGAAACTTTCTCTTGTCGATCACTCAAAGATTGATTATAACCCATTCAAGAAAAATTTTTATATTGAAGTAAAGGAGATTGCCAAGATGACTCCCGAAGAAGTTGCGGCATATAGGAAGGAGCTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTGTAAAATCATGGAATCAAATTGGACTTACTAGTAAAATTTTGGAGACTATAAAGAAGCTTAATTATGAAAAGCCAACATCTATTCAAGCTCAGGCCCTCCCTGTGATTATGAGTGGTAGAGATTGCATTGGAGTTGCTAAAACTGGGTCAGGAAAAACCCTTGCTTTTGTTCTTCCAATGTTGAGGCACATCAAGGATCAACCACCGGTTGTTGCGGGAGATGGACCGATTGGGCTTATAATGGCTCCTACAAGGGAGCTTGTTCAACAAATTCACAGCGATATAAGGAAATTTTCCAAAGTGTTGGGTCTTAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAGCAAATTAGTGAATTGAAACGTGGTACTGAAATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTCTGCACCAGCGGTGGAAAGATAACTAACCTGCGTAGAGTTACTTATCTGGTCATGGATGAGGCTGATCGTATGTTTGACATGGGCTTTGAACCTCAAATCACTCGAATTGTTCAGAATATTCGACCAGATCGTCAAACTGTTCTCTTTTCCGCTACTTTTCCCCGTCAGGTTGAAATTCTAGCTCGTAAGGTTTTGAACAAGCCTGTTGAAATACAAGTTGGTGGAAGGAGTGTTGTTAACAAAGACATAGCACAGCTAGTAGAGGTGAGGCCTGAAAATGAGAGGTTCTTAAGGCTGTTAGAATTACTTGGGGAATGGTATGAGAAGGGAAAGATTTTGATATTTGTCCACTCGCAGGAGAAATGTGATGCTTTGTTCAAGGATATGCTTAGACATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGATCAAACAGATCGGGAGTCCACAATTTCTGACTTCAAAAGCAATGTCTGCAATTTGTTGATTGCAACTAGTGTTGCTGCCAGGGGTTTAGATGTCAAGGAGCTTGAATTGGTTATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGACGCACAGGCCGAGCTGGTCGGAAGGGTTGTGCTATCACATTTATTTCAGTGGAAGAAGCAAGATATGCACCAGATCTGGTTAAAGCTTTGGAGCTATCTGAACAAGTAGTTCCTGATGATCTGAAAGCTCTTGCTGATGGATTTATGGCAAAAGTTAATCAAGGACTAGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAAGTGAGGAGAGCAGCAAAGAAAGCGCAAGCCAAAGAATATGGGTTTGAAGAAGATAAGTCTGATTCTGAGGATGAAGATGAAGGTATTAGGAAGGCTGGAGGTGACATCTCACAGCATCCTGGTCTTGCACAGATTCTAGTTGCTGCCACCAAAGCAAACACCCCTGCTATGCCGTCTTCTTCCCAGGTAATTTCAAGTGGTGGACTGCCTGTTTCTTTACCTTCTGTTCTTGGTCTCCAGACTGCAGGAGTCATGCCTGGGACAGGGCTGCCCGTTGTTCCAAGTGATGGAGCAACTCGGGCAGCATTAGCTGCTATGAACCTACAAAATAAATTAGCTAAAATTGCTGGTGCAATGCCTGAGCATTATGAAGCTGAGTTGGAGATAAATGATTTCCCCCAAAATGCTCGGTGGAAAGTCACACATAAGGAAACTCTAGGCCCAATTTCTGAGTGGACTGGAGCTGCCATTACCACCAGGGGGCAGTATTTCCCACCTGGCAAGATCCCAGGTCCTGGTGAGCGGAAACTCTATTTGTTCATTGAGGGCCCCAGTGAACAGTCTGTCAAGAGAGCAAAAGCAGAATTGAAGCGTGTGCTAGAAGATATCACAAATCAGGCTTTGCAACTTCCTGGTGGTGCTCAACCAGGCAAATACTCTGTTGTATAA 3372 0.4339 MDEGKRKSRKEDYEGKEEDSKRSRRERDREKTSDKGKDRREGRHRDSEKRDRESRRYEREKSSDSDERFDREREKHRDKDKDRMRAHDEERERARDKKREREREDRERERRERREKEREKDRERERDRREHEREREIEKERGRRGRERAKRREVDSEYSDDDSRDRERKRNKKDNDDYKGKEQDKNVNKSSRQAENNEESPRKKSGNDNSDANESKPSREEELEDEHKKLDEEMEKRRRRVQEWQELRRKREEAEREKHGEASADVPKSGKAWTLEGESDDEEGTITGKPNTAMDVDEDDKLSDKEPKDSMVIDVSNGPVTSNLPDEVNGSHADEEIDPLDAFMSSMVLPEVEKLNSAMAPESSNQIADLKPKGNKDEQSNGGNPRKGSNKSIGRIIPGEESDSDYEDLETEGDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYNPFKKNFYIEVKEIAKMTPEEVAAYRKELELKIHGKDVPKPVKSWNQIGLTSKILETIKKLNYEKPTSIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIRKFSKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILIFVHSQEKCDALFKDMLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISVEEARYAPDLVKALELSEQVVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPGLAQILVAATKANTPAMPSSSQVISSGGLPVSLPSVLGLQTAGVMPGTGLPVVPSDGATRAALAAMNLQNKLAKIAGAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIPGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGAQPGKYSVV 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4147g00009 1123 Pfam Helicase conserved C-terminal domain 722 830 IPR001650 -
Pral4147g00009 1123 SMART ultradead3 507 712 IPR014001 -
Pral4147g00009 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 869 IPR027417 -
Pral4147g00009 1123 MobiDBLite consensus disorder prediction 904 937 - -
Pral4147g00009 1123 Gene3D - 440 697 IPR027417 -
Pral4147g00009 1123 MobiDBLite consensus disorder prediction 1 265 - -
Pral4147g00009 1123 Coils Coil 1087 1110 - -
Pral4147g00009 1123 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 519 697 IPR014001 -
Pral4147g00009 1123 Coils Coil 220 257 - -
Pral4147g00009 1123 CDD SF2_C_DEAD 709 839 - -
Pral4147g00009 1123 MobiDBLite consensus disorder prediction 1 333 - -
Pral4147g00009 1123 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 488 516 IPR014014 GO:0003724
Pral4147g00009 1123 FunFam probable ATP-dependent RNA helicase DDX17 450 700 - -
Pral4147g00009 1123 Pfam DEAD/DEAH box helicase 512 684 IPR011545 GO:0003676|GO:0005524
Pral4147g00009 1123 MobiDBLite consensus disorder prediction 293 311 - -
Pral4147g00009 1123 MobiDBLite consensus disorder prediction 403 419 - -
Pral4147g00009 1123 Coils Coil 77 134 - -
Pral4147g00009 1123 CDD KH-I_AtRH42_like 1020 1122 - -
Pral4147g00009 1123 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 643 651 IPR000629 -
Pral4147g00009 1123 MobiDBLite consensus disorder prediction 354 421 - -
Pral4147g00009 1123 Gene3D - 698 872 IPR027417 -
Pral4147g00009 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 699 IPR027417 -
Pral4147g00009 1123 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 725 869 IPR001650 -
Pral4147g00009 1123 MobiDBLite consensus disorder prediction 904 918 - -
Pral4147g00009 1123 CDD DEADc_DDX46 477 698 - -
Pral4147g00009 1123 SMART helicmild6 749 830 IPR001650 -
Pral4147g00009 1123 PANTHER RNA HELICASE 432 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4147g00009 Pral-Chr4147 77944 84894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4147g00009 475 850 Eukaryotic Initiation Factors Gene Family AT3G19760 32.632 3.63e-59 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4147g00009 K12811 - gmx:100784306 1523.45