Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral4147g00006 | ATGGCTTCTTCAATGCAACCTGTTTCTTCGGATGAGCCGGTCGTGACTGTGGATTGGCTTTATGCTAACCTTACGGACCCTGACTTGAAGGTGCTGGATGCATCCTGGTACTTGCCAGATGAACAGAGGAACCCCATTCAAGAATATCAGGCTGCACACATTCCTGGAGCCCTTTTCTTTGACATAGACAGAATAGCAGATCAAACTACAGATTTACCGCATATGTTGCCATCAGAAGAAGCTTTTGCTGCTGCTGTGTCTGCTTTAAACATAGCAAACAAAGACAGAGTGGTTGTTTATGATGGCAAAGGAATATTTAGTGCTGCTCGTGTTTGGTGGATGTTCCGAGTGTTTGGGCATGACAAAGTTTGGGTATTAGATGGTGGACTGCCAAAATGGCGTGCATCCGGATATGACATCAAGACTAGTGCTTCTAGTAATGCTATATTAAAATCCAGTGCCGCTACCGAGGCAGTAGAGAAAGTGTATCAGGGACAGCCAGTTGGCCCAATCTCATTTCAGACTAAATTTCAGCCACATCTTGTTTGGTCCCTGGAACAGGTAAAGAGAAACATTGAGGAAAAAAGCTACCAGCACATAGATGCACGATCAAAACCTAGGTTTGATGGAGTAGCACCAGAACCGCGAAAGGGTATCCAAAGTGGTCATATACCTGGAAGCAAGTGTGTTCCTTTTGTCCAGCTGTTGGATGCTCAACAGACACTGTTGCCAGCAGATGAAATTAAGAAGCGTTTTGATCAAGAAGGTATCTCTTTGGATGACCCCATCATGACTTCTTGTGGCACTGGTGTAACTGCTTGCGTTCTTGTATTGGGCCTCCACCGTATTGGAAAGCATGACATTGCAGTCTATGATGGGTCTTGGACTGAATGGGCTCTACAATCTGATACGGCTAAAGAAACCTCATGA | 930 | 0.4505 | MASSMQPVSSDEPVVTVDWLYANLTDPDLKVLDASWYLPDEQRNPIQEYQAAHIPGALFFDIDRIADQTTDLPHMLPSEEAFAAAVSALNIANKDRVVVYDGKGIFSAARVWWMFRVFGHDKVWVLDGGLPKWRASGYDIKTSASSNAILKSSAATEAVEKVYQGQPVGPISFQTKFQPHLVWSLEQVKRNIEEKSYQHIDARSKPRFDGVAPEPRKGIQSGHIPGSKCVPFVQLLDAQQTLLPADEIKKRFDQEGISLDDPIMTSCGTGVTACVLVLGLHRIGKHDIAVYDGSWTEWALQSDTAKETS | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral4147g00006 | 309 | SUPERFAMILY | Rhodanese/Cell cycle control phosphatase | 11 | 144 | IPR036873 | - | |
| Pral4147g00006 | 309 | CDD | TST_Repeat_1 | 14 | 137 | - | - | |
| Pral4147g00006 | 309 | SUPERFAMILY | Rhodanese/Cell cycle control phosphatase | 186 | 305 | IPR036873 | - | |
| Pral4147g00006 | 309 | SMART | rhod_4 | 15 | 139 | IPR001763 | - | |
| Pral4147g00006 | 309 | SMART | rhod_4 | 183 | 304 | IPR001763 | - | |
| Pral4147g00006 | 309 | Gene3D | - | 8 | 149 | IPR036873 | - | |
| Pral4147g00006 | 309 | Gene3D | - | 178 | 308 | IPR036873 | - | |
| Pral4147g00006 | 309 | ProSitePatterns | Rhodanese signature 1. | 49 | 60 | IPR001307 | GO:0004792 | |
| Pral4147g00006 | 309 | FunFam | Sulfurtransferase | 7 | 149 | - | - | |
| Pral4147g00006 | 309 | CDD | TST_Repeat_2 | 184 | 299 | - | - | |
| Pral4147g00006 | 309 | PANTHER | THIOSULFATE SULFERTANSFERASE | 10 | 308 | IPR045078 | GO:0016783 | |
| Pral4147g00006 | 309 | ProSiteProfiles | Rhodanese domain profile. | 25 | 142 | IPR001763 | - | |
| Pral4147g00006 | 309 | Pfam | Rhodanese-like domain | 16 | 135 | IPR001763 | - | |
| Pral4147g00006 | 309 | Pfam | Rhodanese-like domain | 185 | 300 | IPR001763 | - | |
| Pral4147g00006 | 309 | FunFam | Sulfurtransferase | 178 | 309 | - | - | |
| Pral4147g00006 | 309 | ProSiteProfiles | Rhodanese domain profile. | 193 | 307 | IPR001763 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral4147g00006 | Pral-Chr4147 | 54759 | 61858 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral4147g00006 | 4 | 308 | Sulfurtransferasese or Rhodanese | AT1G79230 | 75.410 | 0.0 | 506 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral4147g00006 | K01011 | - | gmx:100798053 | 526.554 |