Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4147g00002 ATGAAGCAGTGTGTTAGTTCATCAGAGAAAACCCAGAAAACTTTTAAGGTCTCTGCAAATTTTGGGTCGGAGAAGAAGAGAAGAAGAAGAATGGGGAAAGGAAGGGCGCCTTGCTGTGATAAAACTAAAGTCAAGAGAGGACCATGGAGTCCTGAAGAAGACCTTAAGCTCATTACCTTCATCCACAAACACGGCCATGACAATTGGAGAGCCCTTCCTAAGCTTGCAGGATTGGTGAGATGTGGGAAAAGCTGCCGTTTGAGATGGATCAACTACTTGAGGCCTGATGTGAAGCGTGGCAATTTTTCTAAGGAAGAAGAGGACACCATCATAAGGCTTCACCATGCCTTTGGAAACAAGTGGTCAAAGATTGCATCTCATTTGCCAGGAAGGACGGACAATGAGATCAAGAACGTTTGGAACACACATCTCAAGAAAAGATTAAAGCCTAAGCCCTCACAATCACAATCCAATCTTGCTGATGTCTCATCACCAATCACTACTACTACTCTGTCCTCTGATTCATCTTCCTCTGAGAAAATGGAGCAAGACTCAGAGAAACAAGTTCCCAATGAACCTATCAATGGCTTCACAGAGGACCCAAAAGAGTCGTCACCAGCTTCATTCTCTTCCTCTGATCATTCATCATCAAAACCAGAAGATGAAGATGGACAGATTTTAGAGTCTTTGCTGAAAGACGACGATCCTCTGCTCCAAATTCCAATGGACACATTGGACTTTGATATCTGGAATGTTCTGGAGAATCCAGAATCCTTCCAGTCAAATGATTTTCAGGTTCCAAGTGTTTCTGATGATGCAGACCAGAACAAGTGGCTTCGTGAATTAGAGAATGAACTTGGATTGGGAACATCAGAGGGATTCAACCTACCAAGGAACGCTGAGGATGCAGACATGGGTTTTCTTGAATCATCATGGTCCTCTTGGACTGAAATTTACAATTTTTAA 966 0.4296 MKQCVSSSEKTQKTFKVSANFGSEKKRRRRMGKGRAPCCDKTKVKRGPWSPEEDLKLITFIHKHGHDNWRALPKLAGLVRCGKSCRLRWINYLRPDVKRGNFSKEEEDTIIRLHHAFGNKWSKIASHLPGRTDNEIKNVWNTHLKKRLKPKPSQSQSNLADVSSPITTTTLSSDSSSSEKMEQDSEKQVPNEPINGFTEDPKESSPASFSSSDHSSSKPEDEDGQILESLLKDDDPLLQIPMDTLDFDIWNVLENPESFQSNDFQVPSVSDDADQNKWLRELENELGLGTSEGFNLPRNAEDADMGFLESSWSSWTEIYNF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4147g00002 321 MobiDBLite consensus disorder prediction 151 178 - -
Pral4147g00002 321 SMART sant 98 146 IPR001005 -
Pral4147g00002 321 SMART sant 45 95 IPR001005 -
Pral4147g00002 321 MobiDBLite consensus disorder prediction 147 223 - -
Pral4147g00002 321 CDD SANT 48 93 IPR001005 -
Pral4147g00002 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 34 257 - -
Pral4147g00002 321 FunFam Transcription factor RAX3 39 99 - -
Pral4147g00002 321 Gene3D - 100 188 - -
Pral4147g00002 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 148 IPR017930 -
Pral4147g00002 321 SUPERFAMILY Homeodomain-like 44 140 IPR009057 -
Pral4147g00002 321 Pfam Myb-like DNA-binding domain 46 93 IPR001005 -
Pral4147g00002 321 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Pral4147g00002 321 ProSiteProfiles Myb-like domain profile. 41 93 IPR001005 -
Pral4147g00002 321 MobiDBLite consensus disorder prediction 16 43 - -
Pral4147g00002 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 93 IPR017930 -
Pral4147g00002 321 Gene3D - 45 98 - -
Pral4147g00002 321 CDD SANT 101 144 IPR001005 -
Pral4147g00002 321 ProSiteProfiles Myb-like domain profile. 94 144 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4147g00002 Pral-Chr4147 37347 40577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4147g00002 31 150 MYB Transcription Factor Family AT1G56160 86.667 9.17e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4147g00002 Myb_DNA-binding 4.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4147g00002 K09422 - gmx:100805511 275.404