Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4145g00036 ATGAAGGAAGGTGGTAGAAAACATGGCGCAATGTCGCCATGTGCCGCGTGCAAGCTTCTCCGGAGGAGATGTGCTCAGGACTGCCTCTTTGCTCCTTACTTTCCTGCGGATGAACCCCACAAATTTGCAAGCGTTCACAAGGTTTTTGGTGCCAGCAATGTCAATAAAATGTTACAGGAACTGCCAGAGGAGCAAAGGAGCGACGCGGTGAGTTCAATGGTATATGAAGCAAATGCGAGGATGAGGGACCCAGTGTATGGATGTGTGGGGGCCATATCGTGTCTTCAGCAACAGGTCGATGTGCTTCAAACACAACTTGCTCTTGCTCAGGCTGAGCTTGTTCACATCAGAAATCACAACCAACCTTCTTCTTCCTCCTCAACCCAACCCCAGTCTTCTTCCCATGACGCCAAGTCCTCTCTTTTTGCCGTCGACAATGTCACCGAGTCCTTGTGGTCTTGCTAA 465 0.5011 MKEGGRKHGAMSPCAACKLLRRRCAQDCLFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEEQRSDAVSSMVYEANARMRDPVYGCVGAISCLQQQVDVLQTQLALAQAELVHIRNHNQPSSSSSTQPQSSSHDAKSSLFAVDNVTESLWSC 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4145g00036 154 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Pral4145g00036 154 Coils Coil 92 112 - -
Pral4145g00036 154 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 138 - -
Pral4145g00036 154 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Pral4145g00036 154 MobiDBLite consensus disorder prediction 118 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4145g00036 Pral-Chr4145 217248 220342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4145g00036 1 154 AS2 family AT1G16530 58.788 2.92e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral4145g00036 LOB 8.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4145g00036 - - ccaj:109811748 215.312