Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4145g00016 ATGAGCAATATAAGCATGGTGGAGGCGAAGTTGCCCCCAGGTTTCAGGTTCCATCCCAGAGATGAAGAACTTGTGTGCGATTACTTGATGAAGAAAGTCACACACTGTGATAATTCCGATTCCACTCTCATGATTGACGTTGACCTTAACAAGTGTGAGCCTTGGGAAATTCCAGAAGGGGCGTATGTGGGAGGGAAGGAGTGGTATTTCTACACGCAGAGAGACAGAAAGTATGCGACGGGGCAGAGAACAAATAGAGCGACGGCGTCAGGGTATTGGAAGGCCACAGGGAAGGACAGAACTGTGGTGAGGAAAGGCAAAGTGGTTGGCATGAGAAAGACTTTGGTGTTCTATGAAGGAAGGGCTCCCAAAGGCAAAAAGACTGACTGGGTCATGCATGAGTTTCGCCTTCAGCCTCCTCCTCCTCCTCCTCCTCTCTCTCACTCTTTCCCCAAGGAAGACTGGGTGCTGTGTAAAGTATTCGACAAGAACAGAGAAGAAGAAAATGGAAAAGCTGGCATGGGAAGCTGCTATGACGACGCTGGCTCTTCATCTCTTCCTGAACTAATGGATTCTTACATCAGTTTTGATCAGCCTTCTTCTGCAGCTCATCACCATCATCAGCATGAGCAAGTGCCCTGCTTCTCCAATGCTTTCCCTCCTCATCAAACAAACCCTAACCCTAGCAATAACACCACCATCTTCAACCACCATCATACCAACCTAATGGGCCCACCAACTGGATCAGCAGCAGCAGCAGCAGGAAGATCATTTTCCCAGCATGACTCCGAGGTTCTCAAAGCTTTTTTGACACAACTCACCAAGATGGAAACTCAGGAAGGATCGCCTACCAGCTTTGAGGCTCAGGCTTCTCAGACTTACTTATCTCAAGCGCCGTTTCCCAATTATTTATGGAACAGTCGCTAA 927 0.4822 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHCDNSDSTLMIDVDLNKCEPWEIPEGAYVGGKEWYFYTQRDRKYATGQRTNRATASGYWKATGKDRTVVRKGKVVGMRKTLVFYEGRAPKGKKTDWVMHEFRLQPPPPPPPLSHSFPKEDWVLCKVFDKNREEENGKAGMGSCYDDAGSSSLPELMDSYISFDQPSSAAHHHHQHEQVPCFSNAFPPHQTNPNPSNNTTIFNHHHTNLMGPPTGSAAAAAGRSFSQHDSEVLKAFLTQLTKMETQEGSPTSFEAQASQTYLSQAPFPNYLWNSR 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4145g00016 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 236 - -
Pral4145g00016 308 SUPERFAMILY NAC domain 2 163 IPR036093 GO:0003677|GO:0006355
Pral4145g00016 308 Pfam No apical meristem (NAM) protein 12 137 IPR003441 GO:0003677|GO:0006355
Pral4145g00016 308 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Pral4145g00016 308 FunFam NAC domain-containing protein 100-like 20 167 - -
Pral4145g00016 308 ProSiteProfiles NAC domain profile. 11 163 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4145g00016 Pral-Chr4145 76991 80797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4145g00016 2 306 NAC Transcription Factor Family AT1G56010 56.369 6.56e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral4145g00016 NAM 2.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4145g00016 - - qsa:O6P43_001171 368.622