Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral4142g00019 | ATGAAGAAGGCCTACCGACCCATTCACCATACGGGTTTCCCGCGAAACCCGGAATTCCATCGAAATTCTCACCCTCCCTCCAATTTTCGTCCCCGCTGGAAACCAGAATTTCGCCCCAATCAACGCCTGGACCGTCCACTGGAAACCTTTTCTCATGCCCGTCGACCTAATTTCGTCGTTCTGCTCCGCTCTGGCCGCCGCGATTTCACCAGGGCGGATGTCGAGGTCTTGATCACAAAATGCAAGTCCAAGCCCGAGAATTTTAGTGTTTTCCCCGGTGATCATGTTGCCGCCCGCCTAAACTTTTTTCAGTGGTGCGACGCGCTTGAGGCCTTTGTTTTCTTTTGGGAGTTTTGCCTCAATGAAGTTCATGAATTTATTCCGGAGCTCAAATCGCATGTTCTCGTACCTTCTGACATGGACGAGCTACGTGACCGACTTCGGTCCCTTTTCGCTGGTCATGTCAAGGGCTTAATGGAAGGCAAGGAAGTCAAAAGATGGCGTGAGGAAAGTGAGCGTGCCTCGAAGGAACTTGCGCGTTTAATGTATTTACTCCAAAAGCCGAATTCAATCGGCTCGTGGGAGGAGCTCCAAGAAAAGACAAAAGGGATACATTCAGAGAAAAAATTGATTGAAAGGAGAATAAAGGAGTTTCAGTCTGCCATGGAGTGTATATTGCGGTATCTCGAGAACAGCGAGGAGGATGAGGGTGGTATCTCTGTTTTCCGAAAATTGAAGTTTGATGAAACTTCGGATTGGAAGCGTATACATAGGATGATAATGCGGGAGCGTCGCAGACTTGAGGAGGGATTACCCATTTATGCTTACCGGATGGATATTCTTGAGGAAATACATTCTCAACAGATAATGGTCTTAGTTGGGGAGACTGGCTCTGGTAAGAGTACGCAGTTGGTACAGTTTCTTGTTGATTCAGGCATAGGTGCTAATGAATCCATTGTATGCACTCAGCCTCGAAAAATTGCTGCCAGGTCATTGGCACTGAGGGTACGGGAAGAAAGTAGTGGATGCTATGGAGACAATTCAATCAAGTTTTATCCGACATTTTCATCCTCAAATGAGTTCAATTCTGGAATAATATTCATGACAGACAACTGTCTATTGCAGCAGTACATGAGTGATGATAATTTGTCTGGGATCTCATGCCTCATAATCGATGAGGCTCATGAAAGGAGCCTAAATACAGATCTACTGCTGGCATTGGTAAAGAGTTTGCTCTGTAGGAGGGTTGAAATGCGGCTCATCATTATGTCTGCTACAGCTGATGCAAAGCAGCTATCTGATTACTTTTATGGTTGCGGAATATTTCATGTGGTAGGGAGAAACTTTCCAGTCGATGTGAGATATGTTCCTTCTGCTTATGAGGGACACCTTGGTCCTACCATTGTTGCCTCATATGTTTCTGATGTAGTGAGAATGGCTACTGAAATTCACAGAACAGAGAAAGAGGGAACAGTTCTTGCCTTTTTGACCTCACAGATGGAGGTAGAATGGGCTTGTGAAAAGTTTGAAGCTCTCTCTGCTGTAGCATTGCCCTTACATGGCAAGCTTTCACCTGAAGAGCAGTTATGTGTTTTCCAGAACGTCCCTGGAAAAAGAAAGGTGATATTTGCAACTAATCTTGCGGAGACATCGCTCACAATTCCTGGTGTGAGGTATGTCATAGATCCTGGGTTGGTTAAAGATAGTCGATATGAGCCTGGCAGTGGAATGAGTGTCCTTAAAGTTTGCCGGATCAGCCAAAGCTCTGCTAATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTAGATGTTATAGGCTCTACTCAGAACTTGATTATGATTCTATGGCACCAAATCAAGAACCTGAGATTCGACGAGTTCATCTTGGTGTAGCAGTGTTGAGAATTCTTGCCTTGGGAGTGAAGAATGTGCAGGATTTTGATTTTGTTGATGCTCCAAGTCCTAGCTCTATTGAGATGGCAATTAGGAATCTAATTCAATTAGGAGCAATTAGATTGAACAATAATAATTATGAATTAACTGAAGAAGGCAACTTGGTAAAAATGGGTGTTGAGCCTCGGCTTGGTAAACTTATTCTTGGCTGTTACCAGTATGGTTTGGTCAAAGAAGGTCTTACCCTTGCAGCCGTGATGGCCAATGCCAGTAGCATTTTTTGCAGAGTAGGTAATGAAGATGATAAACACAGATCTGATTGTCGCAAGGTGCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTTCTATCTGTATATAAGGAATGGGAAGCTTTGCCCCGAGAGAGGAGAAACAAATGGTGTTGGGAAAACAGTATTAATGCCAAGTCCATGAGGAGATGTCAAGACACCATTAAGGATTTGGAATCTTGCCTTGAGTATGAACTTGATGTTGTTGCTCCAAGCTACTGGCGATGGGATCCTTACAACTCTTCTGATTGTGATCGGTATCTGAAAAGGGTTATACTGTCCTCACTTTCTGAGAATGTTGCCATGTACTCTGGATGCCATCAACTTGGTTATGAAGTGGCATTGACTGGGCAGCTTGTTCAACTGCATCCATCTTGTTCGTTGCTAGTATTCACTGAGAAACCTAGCTGGGTAGTTTTTGGTGAGATACTCTCTGCTTCAAATCAATATTTGGTCTGTGTGAGTTCTTTTGACTTTGAATCATTGTGCAGCATTGGCCCTCCCCTTTTGTTTGATGTATTTCGGATGGAAAGAAAGAAGTTGCAAATGAAGATGTGGACTGGTCTTGGCTGTATTCTGCTTAAGAGATTTTGTGGAAAGGGAAACTGTAATCTGCTTGGTCTTGTGTCACGCATAAGGACAGCTTGCATGGATGAACGTATCTTCATTGATGTTAACGTTGACCAGAATGAAGTTCATCTTTATGCCTCCCCATCTGACATGGAATTGGCTATTGCGATGGTTAATGAAGCTCTGGAATATGAGAGAAAATGGCTGCGTACTGAATGCTTGGAGAAATGTTTGTATCATGGGTCTGGAGTCTCATCTCCAGTAGCTCTGTTTGGATCTGGTGCCGAGATAAAGCATTTGGAAGTTGAAAACCAGTGCTTGAGTGTTGATGTATGCCATCCAAATATAAGTGCATTTAATGATAAGGATCTTTTGATGTTCCTTGAAAAGAATTCCTCAGGTTGTATCTGTGCTGTGCACAAGTTTACAAATGTAGTACAGGAAGTTGAAGATAGAGAGAAGTGGGGCAGGATATCGTTTCTCTCCCCTGATGCGGCTAAAAGAGCTACTGAGCTAGATGGAGTGGATTTTCATGGTTCATCCCTGAGAATATTTCATTCACAGGCTACTAACGGAGGGGATAAAACATTTCCATTCCCTGCTGTTAAAGCCAAATTGTGTTGGCCTCGTAGACCTAGCAAGGGTTTTGGTATTCTTAAATGTGAAATAAAGGATGTTAATTTAATTTTAAAAGATTTCTATAACCTTGTAATAGGAGGGAGGTATGTTCGTTGTGAAGCTGGCAGAAGGGGCTTGGATAGTATTGTGATTGGCGGACTTCATAAAGAACTCTCAGAAGCTGAAATTTTAGATGTACTAAGAACTGCTACAAGTAGGAGGATTCTGGATTTTTTCTTGGTGAGAGGAGATGCTGGTGAGAATCCCTCATGGAATGCTTGTGAGGAGGCGCTTGTAAAAGAAATTTCTCCTTTTATGCCTAAAAGGCACCCCCACACGACTTCTTGCTGTGTTCAGGTGTATCCACCTGAGCCAAAGGATGCCTTCACGAGAGCTTTGGTCACTTTTGATGGAAGATTACATTTGGAGGCAGCAAAGGCTTTGGAGCAAATTGAAGGGAAGGTATTGCCTGGATGTCTTCCTTGGCAGAAGATAAAGTGCCAGCAGTTGTTTCATAGCTCCTTGACATTCCCCGTTCCTGTTTATCGTGTGATTAAGGAACCACTGGATAAGTTACTTGCTAGCTTCGCCTGTATAAAGGGTCTTGAGTGGAACCTAGACATGACTGCTAATGGTTCCTACCGCATCAAAATAACAGCTAATGCCACAAAGACAGTGGCAGAGGTGAGGAGACATCTTGAAGAACTCACAAGGGGGAAAACAATTGTCCACAAGAGTCTTTCCCTTCCGGTTCTACAACTGCTATTGTCCAGAGATGGCATTAATTTTAAAAGCTCAGTACAGCAAGAGACAGAAACATACATTCTTTTTGACCGGCACAACCTGACTTTGCGGGTGTTTGGTTCCCCAAAGAAGGTTGAACTGGCCCAGCAGAAGCTAATTCAATCCTTACTCGCTCTCCACGAAAGGAAGCAGTTAAAAGTCCACCTCCGAGGGAGAGGTCTACCTCCTGATTTGATGAAGCAAGTGGTTAAGAACTTTGGGCCAGATCTCCATGGGCTGAAAGAGAAGATACCAGAGGCAGACTTTTCTCTCAACACACGTCGCCAGATAATCTATCTTCGTGGTAAAATGGAGTTGAAACCAAAAGTAGAGGAATTAATACATGAGATTGCCAGTTCAAGTAGTCATTTGGCTGAGAGACCTGGGACTGGATTGGACTGCCCAATTTGCTTGTGTGAGGTGGAGGATGGTTGTCAGCTTGAAAACTGTGCTCATTTGTTCTGTCGGATGTGTCTGGTGGAGCAATGTGAATCAGCTATAAGAAACCGGGGTAATTTCCCGATACGCTGCAGTCATGCGGGCTGTGGGGATCCCATTCTGCTTGTGGATTTGAAAGCTCTTTTATCTAACGATAAGTTAGAGGAACTTTTTAGAGCCTCTTTGGGAGCTTTTGTAGCTGCTAGTGAGGGCGCATACAGGTTTTGTCCATCTCCTGATTGTCCCTCCATTTATCGAGTAGCTAGTCCTGAGGCAGCAGGCGAGCCATTTGTTTGTGGAGCATGTTATGCCGAGACATGTACGAGGTGTCACTTGGAGTATCATCCATACATTTCATGTGAGAGGTACAAGGAGTTCAAGGAGGATCCAGACTCATCTCTCAAGGAGTGGTGCAAGGGGAAAGAACATGTCAAGACCTGCCCTGCGTGTGGCTATACAATCGAGAAGGTAGATGGGTGCAACCACATTGAGTGCAAGTGTGGGAAGCATGTCTGCTGGTTTTGCCTGGATTTCTTTGGAACCAGTGATGATTGTTATGACCATTTGAGAACTGTACACATGGCCATCATATAA | 5211 | 0.4418 | MKKAYRPIHHTGFPRNPEFHRNSHPPSNFRPRWKPEFRPNQRLDRPLETFSHARRPNFVVLLRSGRRDFTRADVEVLITKCKSKPENFSVFPGDHVAARLNFFQWCDALEAFVFFWEFCLNEVHEFIPELKSHVLVPSDMDELRDRLRSLFAGHVKGLMEGKEVKRWREESERASKELARLMYLLQKPNSIGSWEELQEKTKGIHSEKKLIERRIKEFQSAMECILRYLENSEEDEGGISVFRKLKFDETSDWKRIHRMIMRERRRLEEGLPIYAYRMDILEEIHSQQIMVLVGETGSGKSTQLVQFLVDSGIGANESIVCTQPRKIAARSLALRVREESSGCYGDNSIKFYPTFSSSNEFNSGIIFMTDNCLLQQYMSDDNLSGISCLIIDEAHERSLNTDLLLALVKSLLCRRVEMRLIIMSATADAKQLSDYFYGCGIFHVVGRNFPVDVRYVPSAYEGHLGPTIVASYVSDVVRMATEIHRTEKEGTVLAFLTSQMEVEWACEKFEALSAVALPLHGKLSPEEQLCVFQNVPGKRKVIFATNLAETSLTIPGVRYVIDPGLVKDSRYEPGSGMSVLKVCRISQSSANQRAGRAGRTEPGRCYRLYSELDYDSMAPNQEPEIRRVHLGVAVLRILALGVKNVQDFDFVDAPSPSSIEMAIRNLIQLGAIRLNNNNYELTEEGSXLVKMGVEPRLGKLILGCYQYGLVKEGLTLAAVMANASSIFCRVGNEDDKHRSDCRKVQFCHCDGDLFTLLSVYKEWEALPRERRNKWCWENSINAKSMRRCQDTIKDLESCLEYELDVVAPSYWRWDPYNSSDCDRYLKRVILSSLSENVAMYSGCHQLGYEVALTGQLVQLHPSCSLLVFTEKPSWVVFGEILSASNQYLVCVSSFDFESLCSIGPPLLFDVFRMERKKLQMKMWTGLGCILLKRFCGKGNCNLLGLVSRIRTACMDERIFIDVNVDQNEVHLYASPSDMELAIAMVNEALEYERKWLRTECLEKCLYHGSGVSSPVALFGSGAEIKHLEVENQCLSVDVCHPNISAFNDKDLLMFLEKNSSGCICAVHKFTNVVQEVEDREKWGRISFLSPDAAKRATELDGVDFHGSSLRIFHSQATNGGDKTFPFPAVKAKLCWPRRPSKGFGILKCEIKDVNLILKDFYNLVIGGRYVRCEAGRRGLDSIVIGGLHKELSEAEILDVLRTATSRRILDFFLVRGDAGENPSWNACEEALVKEISPFMPKRHPHTTSCCVQVYPPEPKDAFTRALVTFDGRLHLEAAKALEQIEGKVLPGCLPWQKIKCQQLFHSSLTFPVPVYRVIKEPLDKLLASFACIKGLEWNLDMTANGSYRIKITANATKTVAEVRRHLEELTRGKTIVHKSLSLPVLQLLLSRDGINFKSSVQQETETYILFDRHNLTLRVFGSPKKVELAQQKLIQSLLALHERKQLKVHLRGRGLPPDLMKQVVKNFGPDLHGLKEKIPEADFSLNTRRQIIYLRGKMELKPKVEELIHEIASSSSHLAERPGTGLDCPICLCEVEDGCQLENCAHLFCRMCLVEQCESAIRNRGNFPIRCSHAGCGDPILLVDLKALLSNDKLEELFRASLGAFVAASEGAYRFCPSPDCPSIYRVASPEAAGEPFVCGACYAETCTRCHLEYHPYISCERYKEFKEDPDSSLKEWCKGKEHVKTCPACGYTIEKVDGCNHIECKCGKHVCWFCLDFFGTSDDCYDHLRTVHMAII | 1737 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral4142g00019 | 1737 | CDD | BRcat_RBR | 1613 | 1663 | - | - | |
Pral4142g00019 | 1737 | SMART | helicmild6 | 503 | 601 | IPR001650 | - | |
Pral4142g00019 | 1737 | Pfam | Oligonucleotide/oligosaccharide-binding (OB)-fold | 825 | 904 | IPR011709 | - | |
Pral4142g00019 | 1737 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 475 | 641 | IPR001650 | - | |
Pral4142g00019 | 1737 | PANTHER | ATP-DEPENDENT RNA HELICASE | 234 | 895 | - | - | |
Pral4142g00019 | 1737 | FunFam | RBR-type E3 ubiquitin transferase | 644 | 750 | - | - | |
Pral4142g00019 | 1737 | CDD | Rcat_RBR_DEAH12-like | 1684 | 1733 | - | - | |
Pral4142g00019 | 1737 | Gene3D | - | 645 | 759 | - | - | |
Pral4142g00019 | 1737 | SUPERFAMILY | RING/U-box | 1681 | 1730 | - | - | |
Pral4142g00019 | 1737 | SUPERFAMILY | RING/U-box | 1609 | 1666 | - | - | |
Pral4142g00019 | 1737 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 1712 | 1733 | IPR013087 | - | |
Pral4142g00019 | 1737 | SUPERFAMILY | RING/U-box | 1526 | 1604 | - | - | |
Pral4142g00019 | 1737 | Pfam | IBR domain, a half RING-finger domain | 1606 | 1660 | IPR002867 | GO:0008270 | |
Pral4142g00019 | 1737 | SMART | ha2_5 | 661 | 757 | IPR007502 | GO:0004386 | |
Pral4142g00019 | 1737 | Gene3D | - | 232 | 447 | IPR027417 | - | |
Pral4142g00019 | 1737 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 271 | 778 | IPR027417 | - | |
Pral4142g00019 | 1737 | ProSitePatterns | Zinc finger RING-type signature. | 1544 | 1553 | IPR017907 | - | |
Pral4142g00019 | 1737 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 281 | 445 | IPR014001 | - | |
Pral4142g00019 | 1737 | Pfam | Helicase conserved C-terminal domain | 483 | 600 | IPR001650 | - | |
Pral4142g00019 | 1737 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Pral4142g00019 | 1737 | CDD | DEXHc_RHA-like | 288 | 444 | - | - | |
Pral4142g00019 | 1737 | Pfam | Helicase associated domain (HA2) | 662 | 756 | IPR007502 | GO:0004386 | |
Pral4142g00019 | 1737 | Gene3D | - | 1656 | 1735 | - | - | |
Pral4142g00019 | 1737 | Gene3D | - | 448 | 621 | IPR027417 | - | |
Pral4142g00019 | 1737 | SMART | ibrneu5 | 1595 | 1660 | IPR002867 | GO:0008270 | |
Pral4142g00019 | 1737 | SMART | ibrneu5 | 1661 | 1725 | IPR002867 | GO:0008270 | |
Pral4142g00019 | 1737 | CDD | SF2_C_RHA | 449 | 609 | - | - | |
Pral4142g00019 | 1737 | SMART | ultradead3 | 269 | 454 | IPR014001 | - | |
Pral4142g00019 | 1737 | FunFam | ATP-dependent RNA helicase DEAH12 chloroplastic | 254 | 447 | - | - | |
Pral4142g00019 | 1737 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 387 | 396 | IPR002464 | - | |
Pral4142g00019 | 1737 | FunFam | ATP-dependent RNA helicase DEAH12 chloroplastic | 1656 | 1734 | - | - | |
Pral4142g00019 | 1737 | ProSiteProfiles | TRIAD supradomain profile. | 1524 | 1732 | IPR044066 | - | |
Pral4142g00019 | 1737 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1524 | 1604 | IPR013083 | - | |
Pral4142g00019 | 1737 | FunFam | ATP-dependent RNA helicase DEAH12 chloroplastic | 448 | 620 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral4142g00019 | Pral-Chr4142 | 155415 | 161901 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral4142g00019 | 1543 | 1719 | C3H Transcription Factor Family | AT2G31770 | 27.027 | 7.71e-13 | 71.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral4142g00019 | K12818 | - | gmx:100810008 | 2530.75 |