Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4142g00018 ATGGCTTGTGGAAGAAAATGCAGTCCATTTCCTTCCCCTCTTCAATCGCCGGATCCGCTCTCGCAGTCCCATGGGCCATTCTTGTCCGTCGAAGTTGGTCATAACCTTGGTCAAATTCATGTTCTTCAAGTCGTGATGGCCGCCGTGGCTTCCATATTTGGTATGCTTCTCCTTTTTTTCGTTGTGCTAAAATTTTTGGGAAGGTACTTTTCGAGGAGATATTACAATAGGAGAAACAACCCACCGATACTGTTTGATATTCGCGGAGATTCCGCGTTCTCTGATGACGATGGACCGCCGATTATGCATCCGATCTGGTTCATCAACACCGTCGGTCTCCAACAATCCGTTATAGATTCAATCGCAGTCTTCAAATACAGAAAAGACGATGGATTAGTGGAAGGAACAGAGTGCTCTGTATGTTTAGGTGAGTTTCAAGAAGACGAGAGCCTCCGTCTGTTACCTAAATGCAGCCACGCTTTTCACGCTCAGTGCATAGATACGTGGTTGAGATCGCGTAAGAATTGCCCCTTGTGTCGTGCTCCGATAGTTCGTGAGACTTCCGGAAGAGAGGTAAGCGCCGCCGTGACTGTGCCTGAACTCAACGTCGCCGGCGAGACCCGTGCGGAGAACTCGGATAGTAGTGGTGGGGTAGGCAGTTCTCAGGTTGGAGAAGGTGAGAGTAGTGAATTGAGGCTTGAAGATGGTGATTCTGGGATTGTGCCAGCTGCTGAAGAGGGAGCAGAAGGTGAAGTTTCAGATAAAAATTTGGGTAATTCTGAGAAGATGAGGAGAGTGAGTAGATCAGTTTCAGTACATTCTTATCCTTCTACGTTTGAAGCACCAAATCAGGAGCTGAATTCTTATTCTCTACACTCGTTTTAA 885 0.4712 MACGRKCSPFPSPLQSPDPLSQSHGPFLSVEVGHNLGQIHVLQVVMAAVASIFGMLLLFFVVLKFLGRYFSRRYYNRRNNPPILFDIRGDSAFSDDDGPPIMHPIWFINTVGLQQSVIDSIAVFKYRKDDGLVEGTECSVCLGEFQEDESLRLLPKCSHAFHAQCIDTWLRSRKNCPLCRAPIVRETSGREVSAAVTVPELNVAGETRAENSDSSGGVGSSQVGEGESSELRLEDGDSGIVPAAEEGAEGEVSDKNLGNSEKMRRVSRSVSVHSYPSTFEAPNQELNSYSLHSF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4142g00018 294 SMART FANCL_C_2 134 187 - -
Pral4142g00018 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 188 IPR013083 -
Pral4142g00018 294 MobiDBLite consensus disorder prediction 203 294 - -
Pral4142g00018 294 MobiDBLite consensus disorder prediction 248 268 - -
Pral4142g00018 294 CDD RING-H2_EL5-like 137 180 - -
Pral4142g00018 294 MobiDBLite consensus disorder prediction 270 294 - -
Pral4142g00018 294 SUPERFAMILY RING/U-box 118 188 - -
Pral4142g00018 294 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 46 187 IPR044675 -
Pral4142g00018 294 MobiDBLite consensus disorder prediction 207 227 - -
Pral4142g00018 294 MobiDBLite consensus disorder prediction 1 21 - -
Pral4142g00018 294 FunFam RING-H2 finger protein ATL54 113 186 - -
Pral4142g00018 294 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Pral4142g00018 294 Pfam Ring finger domain 137 180 IPR001841 -
Pral4142g00018 294 SMART ring_2 138 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4142g00018 Pral-Chr4142 151606 152814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4142g00018 95 233 C3H Transcription Factor Family AT4G33565 51.007 2.26e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4142g00018 - - pcin:129308680 407.912