Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4142g00017 ATGCTTCCCCGCTCTATTAGACAAACCCTTATCGAAAAATCCAATGCTTCGAGCAAACAACGCTTTCCCCGCTCCGTTTTGGGATTTTTCCGCCGCCTCTTCACTGCAAAGAAAGCTGATGGGGGCTCGAGGACAGAGGAAGAAGAAAGAGTTTACTCATGGTTATATGCTTTGGCTCGCTCTGAAAAAAACTTGGTCTTTGAGTACGTTCGTTCCACTGAAAGAGGCTTAAGTTTCTCTGAAGCAGAGAGGAGACTGAAGGAAAATGGACCAAATGTTCTGCGTGAGCGTACTTATCCAAGATGGTGGCATCTTCTATGGAGTGCACTTTTTCATCCTTTCAATATCATTCTGATTGTCTTGTCATCCTTGTCCTTCATAACCAGTGACATTTCAAATGGTAGTATCATGCTCACGCTTGTTTTCATCAGTGTCTCCCTTCGTTTCTGTCAGGAGTACAGCAGTTCAAAAGCAGCCATGAAGCTTTCGGAATTTCTAAGATACCCAATAAAAGTTCAAAGATGTGCGGGCAGAGTTGTGCAGCAAGAATTAGTAGTTCAAGTTGATCAGAGGGATATAGTTCCTGGTGACATCGTGATTTTTGAAGCTGGGGACCTCTTTCCCGGAGATGTCAGATTGTTATCTTCCAAAAATCTTGTTGTAAGCCAGTCCTCACTAACTGGGGAATCTTGGACGACTGATAAAACTGCCGATGTCAGAGAAAGTCTAAGCACTCCTTTGCTAGAATTAAAAAACATTTGCTTCATGGGCACAAACGTGGTATCTGGAAATGGGACTGGCCTAGTTATATCTACCGGATCTTATACATACATGAACACCATGTTCTCAAAGATTGGGAAGAAGAAGCCACCAGATGAATTTGAATATGGTCTACGCTGGATATTTTATGTGCTTATGTCTATTATGCTAGTGGTCGTGACAGTCATATTTATAGCAGATTACTCTACATCAAATAATTTGAGCACAAGTATTCTTTTTGCCATCTCTGTGGCATCTGCCCTCACTCCTCAAATGCTCCCCCTCATCGTCAACACTTGCCTTGCAAAAGGAGCACTCGCCATGGCTCGAGACCGATGTATAGTCAAAAGCTTAGCATCAATACGCAACATGGGATCCATGGATATCCTATGTATTGACAAGACAGGTACACTGACAATGAACCGCGCCATTATGGTAAATCATCTTGACTGCCAGGGAATAACGCAGGAGAAAGTTCTACGCTTTGCATTCTTCAATTCTTACTTCAAGACAGATCAGAAGTATCCTCTGGATGATGCCATATTGGCTTTTGTATATTCAAATGGATTCAGATTTCAGCCCTCAAAATGGAGGAAAATAGATGAGATCCCTTTTGATTTCATACGTAGAAGAGTATCCGTCATTGTAGAAACAGAGTCGCGTATTGAAGACGGACAGTCTCAGTTATCTGGCAGGTTTATGGTAACTAAAGGGGCATTGGAGGAAGTAATGAGAGTTTGTTCTTTCATTGAGAACTTCAATAGCAACGAAGTTTCCAAGTTCTCTGCAGACGATTATAACAGAATTTTATCCTTGGCGGAAGGATTGAGCGATGAAGGATTAAGAATTATAGGAGTAGCTATAAAGAAGCTAGAAATGCAAACGGGCGAAACGAGTACCGGAAGTAAGAGCAGCGAAGAAAATGTTGAGACGGACATGGTTTTCCTTGGTGTCATAACGTTCTATGACCCTCCCAAGGACTCGGCAGAACAAGCACTGTGGCGCTTAGCAGAGAAAGGAGTCAAAGCAAAAGTTTTGACTGGTGACTCACTTTCCTTAGCCAAGAGGGTATGCAGGGAAGTAGGCATCAGAACTACCCATGTAATCACAGGGCCTGAGCTAGACAGGCTAGACCAAGAAACTTTCCATGAGACCGTCAAAAGGGCCACAGTCTTAGCTAGGCTAACCCCGATTCAGAAACTGCGTGTAGTCCAGTCCCTACAGACAATGGGAAACCACGTTGTTGGGTTCCTGGGAGATGGTATTAACGACTCACTTGCCCTTGATGCCGCCAATGTAAGCATCTCAGTGGACTCAGGTGTAGCGATTGCCAAGGACATGGCAGATATTATACTGCTTGAGAAAGATCTTAATGTTCTTGTGGCAGGAGTAGAACACGGTAGACTCACTTTTGGAAACACAATGAAATACATCAAAACATCAGTTATTGCTAACATAGGAAGTGTGCTTTCGCTGCTCATAGCAACCTTGGTGCTTAAATTTGAGCCTGTGACTTCAAGGCAGCTTCTTACTCAGAATTTCCTGTATAGTGTAGGACAGATCGCTATTCCATGGGATAAGATGGAGGAAGATTATGTGAAGACTCCTAAGAAATGGTCAGAAAGAGCATTGCCTATGTTCATATTGTGGAATAATCCTGTGTGCACTGTATGTGATGTTGGGACTCTTTTGTTTATTTTTTTCTACTACAAGGCTTTTGGGGATCAAAAGTTTTGCCATTCAGCTTGGTTTGTTGAGGGGTTGCTGATGCAGACTCTGATTATCCACTTGATACGCACTGAGAAAATTCCATTTGTACAGGACATAGCTTCGTGGCCTGTGATTTGTTCCACCGTTGTGATTTCCTCCATTGGAATTGCTCTTCCATTCACACCCATTGGAGAAGTCATGGGACTCACTGGTCTACCTCTGTCGTATTTTGGGTTTTTGGTTGTTCTTTATCTGGTTTATTTCATAATTGGCCAGGTGGTCAAGAGAATTTACATATTGGTTTATAAAAGATGGCTTTGA 2790 0.4269 MLPRSIRQTLIEKSNASSKQRFPRSVLGFFRRLFTAKKADGGSRTEEEERVYSWLYALARSEKNLVFEYVRSTERGLSFSEAERRLKENGPNVLRERTYPRWWHLLWSALFHPFNIILIVLSSLSFITSDISNGSIMLTLVFISVSLRFCQEYSSSKAAMKLSEFLRYPIKVQRCAGRVVQQELVVQVDQRDIVPGDIVIFEAGDLFPGDVRLLSSKNLVVSQSSLTGESWTTDKTADVRESLSTPLLELKNICFMGTNVVSGNGTGLVISTGSYTYMNTMFSKIGKKKPPDEFEYGLRWIFYVLMSIMLVVVTVIFIADYSTSNNLSTSILFAISVASALTPQMLPLIVNTCLAKGALAMARDRCIVKSLASIRNMGSMDILCIDKTGTLTMNRAIMVNHLDCQGITQEKVLRFAFFNSYFKTDQKYPLDDAILAFVYSNGFRFQPSKWRKIDEIPFDFIRRRVSVIVETESRIEDGQSQLSGRFMVTKGALEEVMRVCSFIENFNSNEVSKFSADDYNRILSLAEGLSDEGLRIIGVAIKKLEMQTGETSTGSKSSEENVETDMVFLGVITFYDPPKDSAEQALWRLAEKGVKAKVLTGDSLSLAKRVCREVGIRTTHVITGPELDRLDQETFHETVKRATVLARLTPIQKLRVVQSLQTMGNHVVGFLGDGINDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYIKTSVIANIGSVLSLLIATLVLKFEPVTSRQLLTQNFLYSVGQIAIPWDKMEEDYVKTPKKWSERALPMFILWNNPVCTVCDVGTLLFIFFYYKAFGDQKFCHSAWFVEGLLMQTLIIHLIRTEKIPFVQDIASWPVICSTVVISSIGIALPFTPIGEVMGLTGLPLSYFGFLVVLYLVYFIIGQVVKRIYILVYKRWL 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4142g00017 929 Pfam E1-E2 ATPase 178 363 - -
Pral4142g00017 929 SFLD C1.7: P-type atpase like 366 721 - -
Pral4142g00017 929 SUPERFAMILY Calcium ATPase, transmembrane domain M 72 926 IPR023298 -
Pral4142g00017 929 SUPERFAMILY Calcium ATPase, transduction domain A 178 283 IPR008250 -
Pral4142g00017 929 Gene3D - 133 877 - -
Pral4142g00017 929 PANTHER CATION TRANSPORTING ATPASE 63 921 - -
Pral4142g00017 929 SMART Cation_ATPase_N_a_2 57 130 IPR004014 -
Pral4142g00017 929 Pfam haloacid dehalogenase-like hydrolase 380 685 - -
Pral4142g00017 929 SFLD p-type atpase 366 721 IPR044492 -
Pral4142g00017 929 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 378 578 IPR023299 GO:0000166
Pral4142g00017 929 Gene3D - 168 272 - -
Pral4142g00017 929 ProSitePatterns E1-E2 ATPases phosphorylation site. 386 392 IPR018303 -
Pral4142g00017 929 Gene3D - 381 708 IPR023214 -
Pral4142g00017 929 SUPERFAMILY HAD-like 562 719 IPR036412 -
Pral4142g00017 929 Pfam Cation transporting ATPase, C-terminus 755 920 IPR006068 -
Pral4142g00017 929 Pfam Cation transporter/ATPase, N-terminus 68 125 IPR004014 -
Pral4142g00017 929 NCBIfam HAD-IC family P-type ATPase 137 424 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4142g00017 929 NCBIfam HAD-IC family P-type ATPase 632 751 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4142g00017 929 NCBIfam magnesium-translocating P-type ATPase 57 928 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pral4142g00017 929 PRINTS Magnesium-transporting ATPase signature 297 313 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pral4142g00017 929 PRINTS Magnesium-transporting ATPase signature 779 792 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pral4142g00017 929 PRINTS Magnesium-transporting ATPase signature 418 431 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pral4142g00017 929 PRINTS Magnesium-transporting ATPase signature 832 853 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pral4142g00017 929 PRINTS Magnesium-transporting ATPase signature 799 815 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pral4142g00017 929 PRINTS Magnesium-transporting ATPase signature 882 903 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pral4142g00017 929 PRINTS Magnesium-transporting ATPase signature 729 744 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pral4142g00017 929 PRINTS Magnesium-transporting ATPase signature 747 758 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pral4142g00017 929 Gene3D - 396 575 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4142g00017 Pral-Chr4142 145358 150292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4142g00017 57 794 Primary Pumps ATPases(2) AT1G10130 26.077 1.95e-58 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4142g00017 K01531 - gmx:100795153 1445.64